posterior cingulate gyrus — IGVFSM0381BDNR

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM0381BDNR/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM0381BDNR",
11    "age": "72",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1504_CING_B1"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM0381BDNR](/tissues/IGVFSM0381BDNR/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM0381BDNR/"
25            },
26            {
27                "category": "missing CCF ID",
28                "detail": "Tissue [IGVFSM0381BDNR](/tissues/IGVFSM0381BDNR/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_tissue_ccf_id",
32                "path": "/tissues/IGVFSM0381BDNR/"
33            }
34        ]
35    },
36    "award": {
37        "@id": "/awards/HG012076/",
38        "component": "mapping"
39    },
40    "classifications": [
41        "tissue"
42    ],
43    "creation_timestamp": "2025-03-19T12:58:03.372120+00:00",
44    "date_obtained": "2023-01-09",
45    "disease_terms": [
46        {
47            "@id": "/phenotype-terms/DOID_14330/",
48            "status": "in progress",
49            "term_name": "Parkinson's disease"
50        }
51    ],
52    "donors": [
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54            "@id": "/human-donors/IGVFDO7815RLQM/",
55            "accession": "IGVFDO7815RLQM",
56            "ethnicities": [
57                "European"
58            ],
59            "status": "preview"
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68            ],
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70            "lab": {
71                "title": "Ryan Corces, Gladstone Institute UCSF"
72            },
73            "preferred_assay_title": "10x multiome",
74            "status": "preview",
75            "summary": "single-nucleus ATAC-seq (10x multiome)"
76        },
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103            "summary": "single-nucleus ATAC-seq (10x multiome)"
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130            "status": "preview",
131            "summary": "single-nucleus ATAC-seq (10x multiome)"
132        },
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141                "title": "Ryan Corces, Gladstone Institute UCSF"
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145            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
146        },
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155                "title": "Ryan Corces, Gladstone Institute UCSF"
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159            "summary": "single-nucleus ATAC-seq (10x multiome)"
160        },
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166            ],
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169                "title": "Ryan Corces, Gladstone Institute UCSF"
170            },
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172            "status": "preview",
173            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
174        },
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179                "igvf:corces_measurementSet_X027_G5_ATAC"
180            ],
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183                "title": "Ryan Corces, Gladstone Institute UCSF"
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187            "summary": "single-nucleus ATAC-seq (10x multiome)"
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197                "title": "Ryan Corces, Gladstone Institute UCSF"
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211                "title": "Ryan Corces, Gladstone Institute UCSF"
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215            "summary": "single-nucleus ATAC-seq (10x multiome)"
216        },
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222            ],
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224            "lab": {
225                "title": "Ryan Corces, Gladstone Institute UCSF"
226            },
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228            "status": "preview",
229            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
230        },
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235                "igvf:corces_measurementSet_X027_G3_ATAC"
236            ],
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238            "lab": {
239                "title": "Ryan Corces, Gladstone Institute UCSF"
240            },
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242            "status": "preview",
243            "summary": "single-nucleus ATAC-seq (10x multiome)"
244        },
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250            ],
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252            "lab": {
253                "title": "Ryan Corces, Gladstone Institute UCSF"
254            },
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256            "status": "preview",
257            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
258        },
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266            "lab": {
267                "title": "Ryan Corces, Gladstone Institute UCSF"
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271            "summary": "single-nucleus ATAC-seq (10x multiome)"
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295                "title": "Ryan Corces, Gladstone Institute UCSF"
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299            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
300        },
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308            "lab": {
309                "title": "Ryan Corces, Gladstone Institute UCSF"
310            },
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312            "status": "preview",
313            "summary": "single-nucleus ATAC-seq (10x multiome)"
314        },
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320            ],
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322            "lab": {
323                "title": "Ryan Corces, Gladstone Institute UCSF"
324            },
325            "preferred_assay_title": "10x multiome",
326            "status": "preview",
327            "summary": "single-nucleus ATAC-seq (10x multiome)"
328        },
329        {
330            "@id": "/measurement-sets/IGVFDS4214PHWD/",
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333                "igvf:corces_measurementSet_RP005_G8_RNA"
334            ],
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336            "lab": {
337                "title": "Ryan Corces, Gladstone Institute UCSF"
338            },
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340            "status": "preview",
341            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
342        },
343        {
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348            ],
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350            "lab": {
351                "title": "Ryan Corces, Gladstone Institute UCSF"
352            },
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354            "status": "preview",
355            "summary": "single-nucleus ATAC-seq (10x multiome)"
356        },
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362            ],
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365                "title": "Ryan Corces, Gladstone Institute UCSF"
366            },
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368            "status": "preview",
369            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
370        },
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376            ],
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379                "title": "Ryan Corces, Gladstone Institute UCSF"
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383            "summary": "single-nucleus ATAC-seq (10x multiome)"
384        },
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393                "title": "Ryan Corces, Gladstone Institute UCSF"
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407                "title": "Ryan Corces, Gladstone Institute UCSF"
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412        },
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421                "title": "Ryan Corces, Gladstone Institute UCSF"
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425            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
426        },
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435                "title": "Ryan Corces, Gladstone Institute UCSF"
436            },
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438            "status": "preview",
439            "summary": "single-nucleus ATAC-seq (10x multiome)"
440        },
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449                "title": "Ryan Corces, Gladstone Institute UCSF"
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463                "title": "Ryan Corces, Gladstone Institute UCSF"
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467            "summary": "single-nucleus ATAC-seq (10x multiome)"
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477                "title": "Ryan Corces, Gladstone Institute UCSF"
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480            "status": "preview",
481            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
482        },
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491                "title": "Ryan Corces, Gladstone Institute UCSF"
492            },
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494            "status": "preview",
495            "summary": "single-nucleus ATAC-seq (10x multiome)"
496        },
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505                "title": "Ryan Corces, Gladstone Institute UCSF"
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509            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
510        },
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519                "title": "Ryan Corces, Gladstone Institute UCSF"
520            },
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522            "status": "preview",
523            "summary": "single-nucleus ATAC-seq (10x multiome)"
524        },
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532            "lab": {
533                "title": "Ryan Corces, Gladstone Institute UCSF"
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536            "status": "preview",
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538        },
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546            "lab": {
547                "title": "Ryan Corces, Gladstone Institute UCSF"
548            },
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550            "status": "preview",
551            "summary": "single-nucleus ATAC-seq (10x multiome)"
552        },
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560            "lab": {
561                "title": "Ryan Corces, Gladstone Institute UCSF"
562            },
563            "preferred_assay_title": "10x multiome",
564            "status": "preview",
565            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
566        },
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574            "lab": {
575                "title": "Ryan Corces, Gladstone Institute UCSF"
576            },
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578            "status": "preview",
579            "summary": "single-nucleus ATAC-seq (10x multiome)"
580        },
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588            "lab": {
589                "title": "Ryan Corces, Gladstone Institute UCSF"
590            },
591            "preferred_assay_title": "10x multiome",
592            "status": "preview",
593            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
594        },
595        {
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602            "lab": {
603                "title": "Ryan Corces, Gladstone Institute UCSF"
604            },
605            "preferred_assay_title": "10x multiome",
606            "status": "preview",
607            "summary": "single-nucleus ATAC-seq (10x multiome)"
608        },
609        {
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617                "title": "Ryan Corces, Gladstone Institute UCSF"
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620            "status": "preview",
621            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
622        },
623        {
624            "@id": "/measurement-sets/IGVFDS0577OKVB/",
625            "accession": "IGVFDS0577OKVB",
626            "aliases": [
627                "igvf:corces_measurementSet_RP026_G1_ATAC"
628            ],
629            "file_set_type": "experimental data",
630            "lab": {
631                "title": "Ryan Corces, Gladstone Institute UCSF"
632            },
633            "preferred_assay_title": "10x multiome",
634            "status": "preview",
635            "summary": "single-nucleus ATAC-seq (10x multiome)"
636        },
637        {
638            "@id": "/measurement-sets/IGVFDS0821GFDR/",
639            "accession": "IGVFDS0821GFDR",
640            "aliases": [
641                "igvf:corces_measurementSet_RP026_G1_RNA"
642            ],
643            "file_set_type": "experimental data",
644            "lab": {
645                "title": "Ryan Corces, Gladstone Institute UCSF"
646            },
647            "preferred_assay_title": "10x multiome",
648            "status": "preview",
649            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
650        },
651        {
652            "@id": "/measurement-sets/IGVFDS5780VURI/",
653            "accession": "IGVFDS5780VURI",
654            "aliases": [
655                "igvf:corces_measurementSet_RP026_G3_ATAC"
656            ],
657            "file_set_type": "experimental data",
658            "lab": {
659                "title": "Ryan Corces, Gladstone Institute UCSF"
660            },
661            "preferred_assay_title": "10x multiome",
662            "status": "preview",
663            "summary": "single-nucleus ATAC-seq (10x multiome)"
664        },
665        {
666            "@id": "/measurement-sets/IGVFDS7075IDRS/",
667            "accession": "IGVFDS7075IDRS",
668            "aliases": [
669                "igvf:corces_measurementSet_RP026_G3_RNA"
670            ],
671            "file_set_type": "experimental data",
672            "lab": {
673                "title": "Ryan Corces, Gladstone Institute UCSF"
674            },
675            "preferred_assay_title": "10x multiome",
676            "status": "preview",
677            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
678        },
679        {
680            "@id": "/measurement-sets/IGVFDS5927HVQQ/",
681            "accession": "IGVFDS5927HVQQ",
682            "aliases": [
683                "igvf:corces_measurementSet_RP026_G4_ATAC"
684            ],
685            "file_set_type": "experimental data",
686            "lab": {
687                "title": "Ryan Corces, Gladstone Institute UCSF"
688            },
689            "preferred_assay_title": "10x multiome",
690            "status": "preview",
691            "summary": "single-nucleus ATAC-seq (10x multiome)"
692        },
693        {
694            "@id": "/measurement-sets/IGVFDS6570CCTQ/",
695            "accession": "IGVFDS6570CCTQ",
696            "aliases": [
697                "igvf:corces_measurementSet_RP026_G4_RNA"
698            ],
699            "file_set_type": "experimental data",
700            "lab": {
701                "title": "Ryan Corces, Gladstone Institute UCSF"
702            },
703            "preferred_assay_title": "10x multiome",
704            "status": "preview",
705            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
706        },
707        {
708            "@id": "/measurement-sets/IGVFDS7070YJKH/",
709            "accession": "IGVFDS7070YJKH",
710            "aliases": [
711                "igvf:corces_measurementSet_RP026_G8_ATAC"
712            ],
713            "file_set_type": "experimental data",
714            "lab": {
715                "title": "Ryan Corces, Gladstone Institute UCSF"
716            },
717            "preferred_assay_title": "10x multiome",
718            "status": "preview",
719            "summary": "single-nucleus ATAC-seq (10x multiome)"
720        },
721        {
722            "@id": "/measurement-sets/IGVFDS9706KRLB/",
723            "accession": "IGVFDS9706KRLB",
724            "aliases": [
725                "igvf:corces_measurementSet_RP026_G8_RNA"
726            ],
727            "file_set_type": "experimental data",
728            "lab": {
729                "title": "Ryan Corces, Gladstone Institute UCSF"
730            },
731            "preferred_assay_title": "10x multiome",
732            "status": "preview",
733            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
734        }
735    ],
736    "institutional_certificates": [
737        {
738            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
739            "certificate_identifier": "IP115-05",
740            "controlled_access": false,
741            "status": "in progress"
742        }
743    ],
744    "lab": {
745        "@id": "/labs/ryan-corces/",
746        "title": "Ryan Corces, Gladstone Institute UCSF"
747    },
748    "lower_bound_age": 72,
749    "lower_bound_age_in_hours": 630720,
750    "multiplexed_in": [
751        {
752            "@id": "/multiplexed-samples/IGVFSM0241SZCM/",
753            "accession": "IGVFSM0241SZCM",
754            "status": "preview"
755        },
756        {
757            "@id": "/multiplexed-samples/IGVFSM0591JAPP/",
758            "accession": "IGVFSM0591JAPP",
759            "status": "preview"
760        },
761        {
762            "@id": "/multiplexed-samples/IGVFSM1917JWNL/",
763            "accession": "IGVFSM1917JWNL",
764            "status": "preview"
765        },
766        {
767            "@id": "/multiplexed-samples/IGVFSM6790VZAC/",
768            "accession": "IGVFSM6790VZAC",
769            "status": "preview"
770        },
771        {
772            "@id": "/multiplexed-samples/IGVFSM8693AIJI/",
773            "accession": "IGVFSM8693AIJI",
774            "status": "preview"
775        },
776        {
777            "@id": "/multiplexed-samples/IGVFSM7900CVVQ/",
778            "accession": "IGVFSM7900CVVQ",
779            "status": "preview"
780        },
781        {
782            "@id": "/multiplexed-samples/IGVFSM3694DWTC/",
783            "accession": "IGVFSM3694DWTC",
784            "status": "preview"
785        },
786        {
787            "@id": "/multiplexed-samples/IGVFSM2801FMBF/",
788            "accession": "IGVFSM2801FMBF",
789            "status": "preview"
790        },
791        {
792            "@id": "/multiplexed-samples/IGVFSM3046HYHX/",
793            "accession": "IGVFSM3046HYHX",
794            "status": "preview"
795        },
796        {
797            "@id": "/multiplexed-samples/IGVFSM5214FLGB/",
798            "accession": "IGVFSM5214FLGB",
799            "status": "preview"
800        },
801        {
802            "@id": "/multiplexed-samples/IGVFSM6899HSQU/",
803            "accession": "IGVFSM6899HSQU",
804            "status": "preview"
805        },
806        {
807            "@id": "/multiplexed-samples/IGVFSM1655YUWG/",
808            "accession": "IGVFSM1655YUWG",
809            "status": "preview"
810        },
811        {
812            "@id": "/multiplexed-samples/IGVFSM7731BQTB/",
813            "accession": "IGVFSM7731BQTB",
814            "status": "preview"
815        },
816        {
817            "@id": "/multiplexed-samples/IGVFSM7341RHCE/",
818            "accession": "IGVFSM7341RHCE",
819            "status": "preview"
820        },
821        {
822            "@id": "/multiplexed-samples/IGVFSM0891NGTB/",
823            "accession": "IGVFSM0891NGTB",
824            "status": "preview"
825        },
826        {
827            "@id": "/multiplexed-samples/IGVFSM8050BLFH/",
828            "accession": "IGVFSM8050BLFH",
829            "status": "preview"
830        },
831        {
832            "@id": "/multiplexed-samples/IGVFSM5241MOXO/",
833            "accession": "IGVFSM5241MOXO",
834            "status": "preview"
835        },
836        {
837            "@id": "/multiplexed-samples/IGVFSM3222RGNB/",
838            "accession": "IGVFSM3222RGNB",
839            "status": "preview"
840        },
841        {
842            "@id": "/multiplexed-samples/IGVFSM9641MJVP/",
843            "accession": "IGVFSM9641MJVP",
844            "status": "preview"
845        },
846        {
847            "@id": "/multiplexed-samples/IGVFSM9967FNUH/",
848            "accession": "IGVFSM9967FNUH",
849            "status": "preview"
850        },
851        {
852            "@id": "/multiplexed-samples/IGVFSM0921NWYJ/",
853            "accession": "IGVFSM0921NWYJ",
854            "status": "preview"
855        },
856        {
857            "@id": "/multiplexed-samples/IGVFSM8010OCED/",
858            "accession": "IGVFSM8010OCED",
859            "status": "preview"
860        },
861        {
862            "@id": "/multiplexed-samples/IGVFSM1367EGUO/",
863            "accession": "IGVFSM1367EGUO",
864            "status": "preview"
865        },
866        {
867            "@id": "/multiplexed-samples/IGVFSM2979ZZFZ/",
868            "accession": "IGVFSM2979ZZFZ",
869            "status": "preview"
870        }
871    ],
872    "origin_of": [],
873    "part_of": "/tissues/IGVFSM4648YOXN/",
874    "parts": [],
875    "pmi": 215,
876    "pmi_units": "minute",
877    "pooled_in": [],
878    "preservation_method": "flash-freezing",
879    "protocols": [
880        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
881    ],
882    "sample_terms": [
883        {
884            "@id": "/sample-terms/UBERON_0002740/",
885            "status": "preview",
886            "term_name": "posterior cingulate gyrus"
887        }
888    ],
889    "schema_version": "21",
890    "sex": "female",
891    "sorted_fractions": [],
892    "sources": [
893        {
894            "@id": "/sources/banner-health/",
895            "status": "released",
896            "title": "Banner Health"
897        }
898    ],
899    "status": "preview",
900    "submitted_by": {
901        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
902        "title": "Ryan Corces"
903    },
904    "summary": "Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease",
905    "taxa": "Homo sapiens",
906    "upper_bound_age": 72,
907    "upper_bound_age_in_hours": 630720,
908    "uuid": "aeabfc18-780f-4f7c-817d-b4fc495e7927",
909    "virtual": false
910}