posterior cingulate gyrus — IGVFSM0323YBBI

1{
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4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
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11    "age": "80",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN0315_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing CCF ID",
20                "detail": "Tissue [IGVFSM0323YBBI](/tissues/IGVFSM0323YBBI/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_tissue_ccf_id",
24                "path": "/tissues/IGVFSM0323YBBI/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012076/",
30        "component": "mapping"
31    },
32    "classifications": [
33        "tissue"
34    ],
35    "creation_timestamp": "2025-03-19T04:12:43.874498+00:00",
36    "date_obtained": "2023-02-01",
37    "donors": [
38        {
39            "@id": "/human-donors/IGVFDO8584FBOT/",
40            "accession": "IGVFDO8584FBOT",
41            "ethnicities": [
42                "European"
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45        }
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55            "lab": {
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57            },
58            "preferred_assay_title": "10x multiome",
59            "status": "preview",
60            "summary": "single-nucleus ATAC-seq (10x multiome)"
61        },
62        {
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72            "preferred_assay_title": "10x multiome",
73            "status": "preview",
74            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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84                "title": "Ryan Corces, Gladstone Institute UCSF"
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102            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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116            "summary": "single-nucleus ATAC-seq (10x multiome)"
117        },
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125            "lab": {
126                "title": "Ryan Corces, Gladstone Institute UCSF"
127            },
128            "preferred_assay_title": "10x multiome",
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130            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
131        },
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139            "lab": {
140                "title": "Ryan Corces, Gladstone Institute UCSF"
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143            "status": "preview",
144            "summary": "single-nucleus ATAC-seq (10x multiome)"
145        },
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154                "title": "Ryan Corces, Gladstone Institute UCSF"
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157            "status": "preview",
158            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
159        },
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167            "lab": {
168                "title": "Ryan Corces, Gladstone Institute UCSF"
169            },
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171            "status": "preview",
172            "summary": "single-nucleus ATAC-seq (10x multiome)"
173        },
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182                "title": "Ryan Corces, Gladstone Institute UCSF"
183            },
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196                "title": "Ryan Corces, Gladstone Institute UCSF"
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200            "summary": "single-nucleus ATAC-seq (10x multiome)"
201        },
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210                "title": "Ryan Corces, Gladstone Institute UCSF"
211            },
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213            "status": "preview",
214            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
215        },
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223            "lab": {
224                "title": "Ryan Corces, Gladstone Institute UCSF"
225            },
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228            "summary": "single-nucleus ATAC-seq (10x multiome)"
229        },
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238                "title": "Ryan Corces, Gladstone Institute UCSF"
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241            "status": "preview",
242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
243        },
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251            "lab": {
252                "title": "Ryan Corces, Gladstone Institute UCSF"
253            },
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255            "status": "preview",
256            "summary": "single-nucleus ATAC-seq (10x multiome)"
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266                "title": "Ryan Corces, Gladstone Institute UCSF"
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270            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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280                "title": "Ryan Corces, Gladstone Institute UCSF"
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284            "summary": "single-nucleus ATAC-seq (10x multiome)"
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293            "lab": {
294                "title": "Ryan Corces, Gladstone Institute UCSF"
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297            "status": "preview",
298            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
299        },
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308                "title": "Ryan Corces, Gladstone Institute UCSF"
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311            "status": "preview",
312            "summary": "single-nucleus ATAC-seq (10x multiome)"
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322                "title": "Ryan Corces, Gladstone Institute UCSF"
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326            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
327        },
328        {
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335            "lab": {
336                "title": "Ryan Corces, Gladstone Institute UCSF"
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338            "preferred_assay_title": "10x multiome",
339            "status": "preview",
340            "summary": "single-nucleus ATAC-seq (10x multiome)"
341        },
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350                "title": "Ryan Corces, Gladstone Institute UCSF"
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354            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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364                "title": "Ryan Corces, Gladstone Institute UCSF"
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368            "summary": "single-nucleus ATAC-seq (10x multiome)"
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378                "title": "Ryan Corces, Gladstone Institute UCSF"
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381            "status": "preview",
382            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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392                "title": "Ryan Corces, Gladstone Institute UCSF"
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406                "title": "Ryan Corces, Gladstone Institute UCSF"
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410            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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466            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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476                "title": "Ryan Corces, Gladstone Institute UCSF"
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480            "summary": "single-nucleus ATAC-seq (10x multiome)"
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493            "status": "preview",
494            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
495        }
496    ],
497    "institutional_certificates": [
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500            "certificate_identifier": "IP115-05",
501            "controlled_access": false,
502            "data_use_limitation_summary": "No limitations",
503            "status": "in progress"
504        }
505    ],
506    "lab": {
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508        "title": "Ryan Corces, Gladstone Institute UCSF"
509    },
510    "lower_bound_age": 80,
511    "lower_bound_age_in_hours": 700800,
512    "multiplexed_in": [
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536            "status": "preview"
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538        {
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543        {
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546            "status": "preview"
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548        {
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551            "status": "preview"
552        },
553        {
554            "@id": "/multiplexed-samples/IGVFSM1985AQFP/",
555            "accession": "IGVFSM1985AQFP",
556            "status": "preview"
557        },
558        {
559            "@id": "/multiplexed-samples/IGVFSM1950JZPT/",
560            "accession": "IGVFSM1950JZPT",
561            "status": "preview"
562        },
563        {
564            "@id": "/multiplexed-samples/IGVFSM4237TLBF/",
565            "accession": "IGVFSM4237TLBF",
566            "status": "preview"
567        },
568        {
569            "@id": "/multiplexed-samples/IGVFSM2977RQQH/",
570            "accession": "IGVFSM2977RQQH",
571            "status": "preview"
572        },
573        {
574            "@id": "/multiplexed-samples/IGVFSM7770KKPO/",
575            "accession": "IGVFSM7770KKPO",
576            "status": "preview"
577        },
578        {
579            "@id": "/multiplexed-samples/IGVFSM2706TRTW/",
580            "accession": "IGVFSM2706TRTW",
581            "status": "preview"
582        },
583        {
584            "@id": "/multiplexed-samples/IGVFSM2563FYDL/",
585            "accession": "IGVFSM2563FYDL",
586            "status": "preview"
587        },
588        {
589            "@id": "/multiplexed-samples/IGVFSM5225FGMJ/",
590            "accession": "IGVFSM5225FGMJ",
591            "status": "preview"
592        }
593    ],
594    "origin_of": [],
595    "parts": [],
596    "pmi": 195,
597    "pmi_units": "minute",
598    "pooled_in": [],
599    "preservation_method": "flash-freezing",
600    "protocols": [
601        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
602    ],
603    "sample_terms": [
604        {
605            "@id": "/sample-terms/UBERON_0002740/",
606            "status": "preview",
607            "term_name": "posterior cingulate gyrus"
608        }
609    ],
610    "schema_version": "21",
611    "sex": "male",
612    "sorted_fractions": [],
613    "sources": [
614        {
615            "@id": "/sources/banner-health/",
616            "status": "released",
617            "title": "Banner Health"
618        }
619    ],
620    "status": "preview",
621    "submitted_by": {
622        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
623        "title": "Ryan Corces"
624    },
625    "summary": "Homo sapiens (male, 80 years) posterior cingulate gyrus tissue",
626    "taxa": "Homo sapiens",
627    "upper_bound_age": 80,
628    "upper_bound_age_in_hours": 700800,
629    "uuid": "9e56c5b3-6f45-499c-a821-b92efe5a84fd",
630    "virtual": false
631}