{
"@context": "/terms/",
"@id": "/tissues/IGVFSM0063INIE/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0063INIE",
"age": "80",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN0129_MTG_B1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM0063INIE](/tissues/IGVFSM0063INIE/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM0063INIE/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM0063INIE](/tissues/IGVFSM0063INIE/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM0063INIE/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM0063INIE](/tissues/IGVFSM0063INIE/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM0063INIE/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T12:58:11.555188+00:00",
"date_obtained": "2023-01-24",
"disease_terms": [
{
"@id": "/phenotype-terms/MONDO_0004975/",
"status": "released",
"term_name": "Alzheimer disease"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO4191KJBR/",
"accession": "IGVFDO4191KJBR",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS1277OGTW/",
"accession": "IGVFDS1277OGTW",
"aliases": [
"igvf:corces_measurementSet_X030_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9206CEMZ/",
"accession": "IGVFDS9206CEMZ",
"aliases": [
"igvf:corces_measurementSet_X030_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6683OXVV/",
"accession": "IGVFDS6683OXVV",
"aliases": [
"igvf:corces_measurementSet_X030_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7893QDGL/",
"accession": "IGVFDS7893QDGL",
"aliases": [
"igvf:corces_measurementSet_X030_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9717MUOO/",
"accession": "IGVFDS9717MUOO",
"aliases": [
"igvf:corces_measurementSet_X030_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1709UIOJ/",
"accession": "IGVFDS1709UIOJ",
"aliases": [
"igvf:corces_measurementSet_X030_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6314VXYS/",
"accession": "IGVFDS6314VXYS",
"aliases": [
"igvf:corces_measurementSet_X030_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8258JZZR/",
"accession": "IGVFDS8258JZZR",
"aliases": [
"igvf:corces_measurementSet_X030_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3239VAXE/",
"accession": "IGVFDS3239VAXE",
"aliases": [
"igvf:corces_measurementSet_X030_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5694ZNBB/",
"accession": "IGVFDS5694ZNBB",
"aliases": [
"igvf:corces_measurementSet_X030_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1874RVBJ/",
"accession": "IGVFDS1874RVBJ",
"aliases": [
"igvf:corces_measurementSet_X030_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2205VLAL/",
"accession": "IGVFDS2205VLAL",
"aliases": [
"igvf:corces_measurementSet_X030_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4785ZNDK/",
"accession": "IGVFDS4785ZNDK",
"aliases": [
"igvf:corces_measurementSet_X030_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0818IGBJ/",
"accession": "IGVFDS0818IGBJ",
"aliases": [
"igvf:corces_measurementSet_X030_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4520GXBK/",
"accession": "IGVFDS4520GXBK",
"aliases": [
"igvf:corces_measurementSet_X030_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3450MBZM/",
"accession": "IGVFDS3450MBZM",
"aliases": [
"igvf:corces_measurementSet_X030_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5253YWJE/",
"accession": "IGVFDS5253YWJE",
"aliases": [
"igvf:corces_measurementSet_RP006_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0247BVMI/",
"accession": "IGVFDS0247BVMI",
"aliases": [
"igvf:corces_measurementSet_RP006_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5213ILTX/",
"accession": "IGVFDS5213ILTX",
"aliases": [
"igvf:corces_measurementSet_RP006_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4220YBNS/",
"accession": "IGVFDS4220YBNS",
"aliases": [
"igvf:corces_measurementSet_RP006_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8526XWJQ/",
"accession": "IGVFDS8526XWJQ",
"aliases": [
"igvf:corces_measurementSet_RP006_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7841JFNQ/",
"accession": "IGVFDS7841JFNQ",
"aliases": [
"igvf:corces_measurementSet_RP006_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1296AIPR/",
"accession": "IGVFDS1296AIPR",
"aliases": [
"igvf:corces_measurementSet_RP006_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4293IYYN/",
"accession": "IGVFDS4293IYYN",
"aliases": [
"igvf:corces_measurementSet_RP006_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3587WOCX/",
"accession": "IGVFDS3587WOCX",
"aliases": [
"igvf:corces_measurementSet_RP006_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8279BIFD/",
"accession": "IGVFDS8279BIFD",
"aliases": [
"igvf:corces_measurementSet_RP006_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0802QULQ/",
"accession": "IGVFDS0802QULQ",
"aliases": [
"igvf:corces_measurementSet_RP006_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3171AYJR/",
"accession": "IGVFDS3171AYJR",
"aliases": [
"igvf:corces_measurementSet_RP006_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0585JEMM/",
"accession": "IGVFDS0585JEMM",
"aliases": [
"igvf:corces_measurementSet_RP006_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3136TLZY/",
"accession": "IGVFDS3136TLZY",
"aliases": [
"igvf:corces_measurementSet_RP006_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0299PZQV/",
"accession": "IGVFDS0299PZQV",
"aliases": [
"igvf:corces_measurementSet_RP006_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0646FGSI/",
"accession": "IGVFDS0646FGSI",
"aliases": [
"igvf:corces_measurementSet_RP006_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 80,
"lower_bound_age_in_hours": 700800,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM0722WVNE/",
"accession": "IGVFSM0722WVNE",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1890PIKY/",
"accession": "IGVFSM1890PIKY",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9015BILW/",
"accession": "IGVFSM9015BILW",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9502SLKA/",
"accession": "IGVFSM9502SLKA",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3925MMVB/",
"accession": "IGVFSM3925MMVB",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2378UJCJ/",
"accession": "IGVFSM2378UJCJ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8429YTMF/",
"accession": "IGVFSM8429YTMF",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0177WEBY/",
"accession": "IGVFSM0177WEBY",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3715NVPJ/",
"accession": "IGVFSM3715NVPJ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7010YPUF/",
"accession": "IGVFSM7010YPUF",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8836YFFV/",
"accession": "IGVFSM8836YFFV",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2981VRFX/",
"accession": "IGVFSM2981VRFX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7661NHYY/",
"accession": "IGVFSM7661NHYY",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9866POVO/",
"accession": "IGVFSM9866POVO",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5801EHME/",
"accession": "IGVFSM5801EHME",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6003RYZR/",
"accession": "IGVFSM6003RYZR",
"status": "preview"
}
],
"origin_of": [],
"part_of": "/tissues/IGVFSM3927EIMT/",
"parts": [],
"pmi": 200,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy",
"taxa": "Homo sapiens",
"upper_bound_age": 80,
"upper_bound_age_in_hours": 700800,
"uuid": "b2a50322-71d3-4951-8214-d1f389dc1b9e",
"virtual": false
}