{
"@context": "/terms/",
"@id": "/tissues/IGVFSM0017RNPX/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0017RNPX",
"age": "92",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1644_MTG"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM0017RNPX](/tissues/IGVFSM0017RNPX/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM0017RNPX/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM0017RNPX](/tissues/IGVFSM0017RNPX/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM0017RNPX/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM0017RNPX](/tissues/IGVFSM0017RNPX/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM0017RNPX/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM0017RNPX](/tissues/IGVFSM0017RNPX/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM0017RNPX/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:08:35.269627+00:00",
"date_obtained": "2022-10-24",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO4438WASY/",
"accession": "IGVFDO4438WASY",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS3906MJRZ/",
"accession": "IGVFDS3906MJRZ",
"aliases": [
"igvf:corces_measurementSet_X010_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3523OUSU/",
"accession": "IGVFDS3523OUSU",
"aliases": [
"igvf:corces_measurementSet_X010_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3082IAKC/",
"accession": "IGVFDS3082IAKC",
"aliases": [
"igvf:corces_measurementSet_X010_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2742JUQC/",
"accession": "IGVFDS2742JUQC",
"aliases": [
"igvf:corces_measurementSet_X010_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2695QSNJ/",
"accession": "IGVFDS2695QSNJ",
"aliases": [
"igvf:corces_measurementSet_X010_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8788ZHNN/",
"accession": "IGVFDS8788ZHNN",
"aliases": [
"igvf:corces_measurementSet_X010_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8437JRRP/",
"accession": "IGVFDS8437JRRP",
"aliases": [
"igvf:corces_measurementSet_X010_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9790PNTZ/",
"accession": "IGVFDS9790PNTZ",
"aliases": [
"igvf:corces_measurementSet_X010_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7866JXEW/",
"accession": "IGVFDS7866JXEW",
"aliases": [
"igvf:corces_measurementSet_X010_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9655EEFO/",
"accession": "IGVFDS9655EEFO",
"aliases": [
"igvf:corces_measurementSet_X010_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5532ZXNF/",
"accession": "IGVFDS5532ZXNF",
"aliases": [
"igvf:corces_measurementSet_X010_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5869YFNA/",
"accession": "IGVFDS5869YFNA",
"aliases": [
"igvf:corces_measurementSet_X010_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2046NYYD/",
"accession": "IGVFDS2046NYYD",
"aliases": [
"igvf:corces_measurementSet_X010_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6610EBRU/",
"accession": "IGVFDS6610EBRU",
"aliases": [
"igvf:corces_measurementSet_X010_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2673QZAP/",
"accession": "IGVFDS2673QZAP",
"aliases": [
"igvf:corces_measurementSet_X010_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6589NGAU/",
"accession": "IGVFDS6589NGAU",
"aliases": [
"igvf:corces_measurementSet_X010_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0183JRRR/",
"accession": "IGVFDS0183JRRR",
"aliases": [
"igvf:corces_measurementSet_RP007_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1275ATQY/",
"accession": "IGVFDS1275ATQY",
"aliases": [
"igvf:corces_measurementSet_RP007_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2017QGND/",
"accession": "IGVFDS2017QGND",
"aliases": [
"igvf:corces_measurementSet_RP007_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8353JJNR/",
"accession": "IGVFDS8353JJNR",
"aliases": [
"igvf:corces_measurementSet_RP007_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1769TMSZ/",
"accession": "IGVFDS1769TMSZ",
"aliases": [
"igvf:corces_measurementSet_RP007_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5652INCZ/",
"accession": "IGVFDS5652INCZ",
"aliases": [
"igvf:corces_measurementSet_RP007_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0925GEIE/",
"accession": "IGVFDS0925GEIE",
"aliases": [
"igvf:corces_measurementSet_RP007_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3915VXZC/",
"accession": "IGVFDS3915VXZC",
"aliases": [
"igvf:corces_measurementSet_RP007_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8683RWTE/",
"accession": "IGVFDS8683RWTE",
"aliases": [
"igvf:corces_measurementSet_RP007_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6850KERY/",
"accession": "IGVFDS6850KERY",
"aliases": [
"igvf:corces_measurementSet_RP007_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8184HHTJ/",
"accession": "IGVFDS8184HHTJ",
"aliases": [
"igvf:corces_measurementSet_RP007_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5144SCSL/",
"accession": "IGVFDS5144SCSL",
"aliases": [
"igvf:corces_measurementSet_RP007_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8885GAJV/",
"accession": "IGVFDS8885GAJV",
"aliases": [
"igvf:corces_measurementSet_RP007_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2585XWPY/",
"accession": "IGVFDS2585XWPY",
"aliases": [
"igvf:corces_measurementSet_RP007_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1652TDRC/",
"accession": "IGVFDS1652TDRC",
"aliases": [
"igvf:corces_measurementSet_RP007_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2689NPPZ/",
"accession": "IGVFDS2689NPPZ",
"aliases": [
"igvf:corces_measurementSet_RP007_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 92,
"lower_bound_age_in_hours": 805920,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM7630MDYJ/",
"accession": "IGVFSM7630MDYJ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2403GODW/",
"accession": "IGVFSM2403GODW",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3084IVUH/",
"accession": "IGVFSM3084IVUH",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6456NQTK/",
"accession": "IGVFSM6456NQTK",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4584XRDP/",
"accession": "IGVFSM4584XRDP",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9228FDFE/",
"accession": "IGVFSM9228FDFE",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9348OQXF/",
"accession": "IGVFSM9348OQXF",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3089OHDA/",
"accession": "IGVFSM3089OHDA",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4037ZUPB/",
"accession": "IGVFSM4037ZUPB",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7646ONHX/",
"accession": "IGVFSM7646ONHX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1887PDIV/",
"accession": "IGVFSM1887PDIV",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2267IQVP/",
"accession": "IGVFSM2267IQVP",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4219SNVI/",
"accession": "IGVFSM4219SNVI",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3050FUJW/",
"accession": "IGVFSM3050FUJW",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2276WIKG/",
"accession": "IGVFSM2276WIKG",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0124BONK/",
"accession": "IGVFSM0124BONK",
"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pmi": 145,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment",
"taxa": "Homo sapiens",
"upper_bound_age": 92,
"upper_bound_age_in_hours": 805920,
"uuid": "ee80a4a9-c8c0-466a-ace8-d78e50bac94c",
"virtual": false
}