{
"@context": "/terms/",
"@id": "/tissues/IGVFSM0016EGJX/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0016EGJX",
"age": "65",
"age_units": "day",
"aliases": [
"ali-mortazavi:244_TREM2_10F_01_UBERON_0001898"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Tissue [IGVFSM0016EGJX](/tissues/IGVFSM0016EGJX/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/tissues/IGVFSM0016EGJX/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2024-10-16T23:16:51.739519+00:00",
"donors": [
{
"@id": "/rodent-donors/IGVFDO9500GYNY/",
"accession": "IGVFDO9500GYNY",
"status": "released",
"strain": "B6(SJL)-Trem2<em1Aduci>/J"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS9176CSYH/",
"accession": "IGVFDS9176CSYH",
"aliases": [
"ali-mortazavi:015_67E_illumina"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"preferred_assay_title": "Parse SPLiT-seq",
"status": "released",
"summary": "Parse SPLiT-seq"
},
{
"@id": "/analysis-sets/IGVFDS1543FSNM/",
"accession": "IGVFDS1543FSNM",
"aliases": [
"ali-mortazavi:igvf_015_Subpool_UDI27_total+core"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS3307LCYV/",
"accession": "IGVFDS3307LCYV",
"aliases": [
"ali-mortazavi:trem2_cortexhippocampus_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS1969BPHC/",
"accession": "IGVFDS1969BPHC",
"aliases": [
"ali-mortazavi:trem2_gonadsfemale_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS5270GNCH/",
"accession": "IGVFDS5270GNCH",
"aliases": [
"ali-mortazavi:trem2_liver_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS0262UVCA/",
"accession": "IGVFDS0262UVCA",
"aliases": [
"ali-mortazavi:trem2_adrenal_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS1854AUUI/",
"accession": "IGVFDS1854AUUI",
"aliases": [
"ali-mortazavi:trem2_diencephalonpituitary_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS9802FTSJ/",
"accession": "IGVFDS9802FTSJ",
"aliases": [
"ali-mortazavi:trem2_gastrocnemius_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS8104ESQN/",
"accession": "IGVFDS8104ESQN",
"aliases": [
"ali-mortazavi:trem2_heart_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS7546DRSQ/",
"accession": "IGVFDS7546DRSQ",
"aliases": [
"ali-mortazavi:trem2_kidney_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS8922SXYI/",
"accession": "IGVFDS8922SXYI",
"aliases": [
"ali-mortazavi:trem2_gonadsmale_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS6994WJTF/",
"accession": "IGVFDS6994WJTF",
"aliases": [
"ali-mortazavi:trem2_pbmc_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/measurement-sets/IGVFDS1479KDWW/",
"accession": "IGVFDS1479KDWW",
"aliases": [
"ali-mortazavi:015_67C_illumina"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"preferred_assay_title": "Parse SPLiT-seq",
"status": "released",
"summary": "Parse SPLiT-seq"
},
{
"@id": "/analysis-sets/IGVFDS0231SHJE/",
"accession": "IGVFDS0231SHJE",
"aliases": [
"ali-mortazavi:igvf_015_Subpool_UDI25_total+core"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/measurement-sets/IGVFDS7747QPWM/",
"accession": "IGVFDS7747QPWM",
"aliases": [
"ali-mortazavi:015_67F_illumina"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"preferred_assay_title": "Parse SPLiT-seq",
"status": "released",
"summary": "Parse SPLiT-seq"
},
{
"@id": "/analysis-sets/IGVFDS2867PIOX/",
"accession": "IGVFDS2867PIOX",
"aliases": [
"ali-mortazavi:igvf_015_Subpool_UDI28_total+core"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/measurement-sets/IGVFDS9604WYAS/",
"accession": "IGVFDS9604WYAS",
"aliases": [
"ali-mortazavi:015_67D_illumina"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"preferred_assay_title": "Parse SPLiT-seq",
"status": "released",
"summary": "Parse SPLiT-seq"
},
{
"@id": "/analysis-sets/IGVFDS3516UQYJ/",
"accession": "IGVFDS3516UQYJ",
"aliases": [
"ali-mortazavi:igvf_015_Subpool_UDI26_total+core"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"lower_bound_age": 65,
"lower_bound_age_in_hours": 1560,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM4363PDKN/",
"accession": "IGVFSM4363PDKN",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM9995ROHB/",
"accession": "IGVFSM9995ROHB",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM5830NUXR/",
"accession": "IGVFSM5830NUXR",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM2647QPOT/",
"accession": "IGVFSM2647QPOT",
"status": "released"
}
],
"origin_of": [],
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-04-19T02:00:18.390420+00:00",
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001898/",
"status": "released",
"term_name": "hypothalamus"
}
],
"schema_version": "21",
"sex": "female",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/jackson-labs/",
"status": "released",
"title": "The Jackson Laboratory"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"summary": "Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue",
"taxa": "Mus musculus",
"upper_bound_age": 65,
"upper_bound_age_in_hours": 1560,
"uuid": "d02fb055-86a5-4a63-89ca-5f7ce5e4c3ae",
"virtual": false
}