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IGVFFI9916JAHE

released
validated
File Set
IGVFDS7801YPEU(scATAC-seq: fragments, peaks, signal, sparse peak count matrix)
Summary
GRCm39 filtered normalized unstranded signal
File Format
bigWig
Content Type
signal
Content Summary
filtered normalized unstranded signal
Aliases
jay-shendure:scATAC_mEBs_bigwig_surface_ectoderm
md5sum
82da4a3d530950f04b0f21050f3a9453
File Size
77 MB
Submitted File Name
/net/shendure/vol8/projects/JBL/GEO_scATAC_EB_correction_nobackup/bigwigs/surface_ectoderm-TileSize-50-normMethod-ReadsInTSS-ArchR_mm39.bw

Signal Details

Strand Specificity
unstranded
Filtered
True
Normalized
True

Samples

4 items
Sample Terms
Summary
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44

Files This File Derives From

32 items
fastq
reads
Jay Shendure, UW
3.5 GB
validated
fastq
reads
Jay Shendure, UW
753 MB
validated
fastq
reads
Jay Shendure, UW
3.5 GB
validated
fastq
reads
Jay Shendure, UW
782 MB
validated
fastq
reads
Jay Shendure, UW
1.9 GB
validated
fastq
reads
Jay Shendure, UW
3.6 GB
validated
fastq
reads
Jay Shendure, UW
3.3 GB
validated
fastq
reads
Jay Shendure, UW
3.6 GB
validated
fastq
reads
Jay Shendure, UW
828 MB
validated
fastq
reads
Jay Shendure, UW
716 MB
validated

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW