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IGVFFI4106YTGZ

released
validated
File Set
IGVFDS7801YPEU(scATAC-seq: fragments, peaks, signal, sparse peak count matrix)
Summary
GRCm39 filtered normalized unstranded signal
Analysis Step Version
/analysis-step-versions/4b52b7fa-e00e-4fc8-b653-ab0ca32174ba/
File Format
bigWig
Content Type
signal
Content Summary
filtered normalized unstranded signal
Aliases
jay-shendure:scATAC_mEBs_bigwig_ex_endo_visceral
md5sum
3527dba94878c74f585c22c647c6f211
File Size
87 MB
Submitted File Name
/net/shendure/vol8/projects/JBL/GEO_scATAC_EB_correction_nobackup/bigwigs/ex_endo_visceral-TileSize-50-normMethod-ReadsInTSS-ArchR_mm39.bw
Checkfiles Version
Legacy version of checkfiles

Signal Details

Strand Specificity
unstranded
Filtered
True
Normalized
True
Genome Assembly
GRCm39

Samples

4 items
Sample Terms
Summary
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
peaks
Jay Shendure, UW
2.7 MB
validated

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW