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Content Type
File Format
File Format Type
Assembly
Transcriptome Annotation
Sequencing Platform
File Set Type
Assay
Annotated Cell Type
Taxa
Sample
Classification
Cellular Transformation Target
Modification
Treatment
Workflow
Uniformly Processed
Library Type
Sequencing Kit
Collections
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Externally Hosted
Status
released
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13199 items
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528
SequenceFile
IGVFFI1165AJSO
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI2309FCAH
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI6229GGKZ
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI9141IFTT
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI5295OHTL
fastq - reads - I1
Jay Shendure, UW
File Set
gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci
released
validated
SequenceFile
IGVFFI1792RKRX
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI6599VIPD
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI7164IWPZ
fastq - reads - R3
Jay Shendure, UW
File Set
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI8554OPUE
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI2796VWCV
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
ConfigurationFile
IGVFFI7248KXML
yaml - seqspec
Jesse Engreitz, Stanford
File Set
mixed CRISPR FlowFISH screen sorted on the expression of CCND1 integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Seqspec Of
IGVFFI8964HZGC
released
validated
SequenceFile
IGVFFI1163QCXS
fastq - reads - I1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI7103JDWM
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI1089XLDA
fastq - reads - I1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI1956EMDR
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI2908NAIM
fastq - reads - R2
Jay Shendure, UW
File Set
gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci
released
validated
SequenceFile
IGVFFI1340BULZ
fastq - reads
Jesse Engreitz, Stanford
File Set
mixed CRISPR FlowFISH screen sorted on the expression of CCND1 integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
released
validated
ConfigurationFile
IGVFFI0714MTNO
yaml - seqspec
Jesse Engreitz, Stanford
File Set
mixed CRISPR FlowFISH screen sorted on the expression of ITPRID2 integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Seqspec Of
IGVFFI1411ZGTO
released
validated
ConfigurationFile
IGVFFI8240YUYH
yaml - seqspec
Jay Shendure, UW
File Set
scATAC-seq
Seqspec Of
IGVFFI8821SFDV
,
IGVFFI4136YACE
,
IGVFFI0014UJDI
,
IGVFFI2437FQNY
released
validated
SequenceFile
IGVFFI3750JGII
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI3469NFLH
fastq - reads
Jesse Engreitz, Stanford
File Set
mixed CRISPR FlowFISH screen sorted on the expression of KITLG integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI3146DLTR
fastq - reads - R1
Jason Buenrostro, Broad
File Set
single-cell RNA sequencing assay (SHARE-seq)
released
validated
SequenceFile
IGVFFI2905KIJB
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
ConfigurationFile
IGVFFI5228SMZU
yaml - seqspec
Ali Mortazavi, UCI
File Set
Parse SPLiT-seq
Seqspec Of
IGVFFI5241MPKQ
,
IGVFFI0800JAPD
released
validated
ConfigurationFile
IGVFFI8969XVTD
yaml - seqspec
Jesse Engreitz, Stanford
File Set
mixed CRISPR FlowFISH screen sorted on the expression of FAM3C integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Seqspec Of
IGVFFI0721XHEB
released
validated