10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Ansuman Satpathy, Stanford
Samples
Homo sapiens multiplexed sample of GM25256 (WTC-11), H7-hESC
released
principal
AnalysisSet
IGVFDS5394QLIN
lentiMPRA: reporter genomic variant effects
Nadav Ahituv, UCSF
Samples
Homo sapiens H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron, at 7 day(s) post change, transfected with a reporter library
released
intermediate
AnalysisSet
IGVFDS2296EFNK
CRISPR HiCAR: contact matrix
Charles Gersbach, Duke
Samples
Homo sapiens GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 42 day(s) post change, perturbed with 1 μM Endothelin-1 for 3 days, transfected with a guide library
released
principal
AnalysisSet
IGVFDS6344XBAV
ATAC-seq: alignments, fold change over control, peak quantifications
Charles Gersbach, Duke
Samples
Homo sapiens CD8-positive, alpha-beta memory T primary cell primary cell, stimulated with 300 percent Antibody Coated Bead for 14 days, transfected with a expression vector library
Homo sapiens CD8-positive, alpha-beta memory T primary cell primary cell, modified with CRISPRa Sa-dCas9-VP64, transfected with a guide library, sorted on expression of CCR7
Homo sapiens K562 cell line, transfected with a reporter library
released
intermediate
AnalysisSet
IGVFDS5192PMWB
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Ansuman Satpathy, Stanford
Samples
Homo sapiens multiplexed sample of H1-hESC
released
intermediate
AnalysisSet
IGVFDS9608RUYZ
CRISPR HiCAR: contact matrix
Charles Gersbach, Duke
Samples
Homo sapiens GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 42 day(s) post change, perturbed with 1 μM Endothelin-1 for 3 days, transfected with a guide library
released
intermediate
AnalysisSet
IGVFDS8055FNVD
CRISPR HiCAR: contact matrix
Charles Gersbach, Duke
Samples
Homo sapiens GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 42 day(s) post change, transfected with a guide library
released
intermediate
AnalysisSet
IGVFDS3114UZXE
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Ansuman Satpathy, Stanford
Samples
Homo sapiens multiplexed sample of GM25256 (WTC-11)
released
intermediate
AnalysisSet
IGVFDS9896QVZT
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Ansuman Satpathy, Stanford
Samples
Homo sapiens multiplexed sample of GM25256 (WTC-11), H9, HepG2
released
intermediate
AnalysisSet
IGVFDS3159CKGQ
CRISPR HiCAR: contact matrix
Charles Gersbach, Duke
Samples
Mus musculus HL-1 cell line, transfected with a guide library
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Ansuman Satpathy, Stanford
Samples
Homo sapiens multiplexed sample of B cell, bone marrow
released
principal
AnalysisSet
IGVFDS5056OAGR
CRISPR prime editing Variant-EFFECTS targeting PPIF: variant effects
Jesse Engreitz, Stanford
Samples
Homo sapiens THP-1 cell line, modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library, sorted on expression of PPIF
released
principal
AnalysisSet
IGVFDS2302NLIO
ATAC-seq: alignments, fold change over control, peak quantifications
Charles Gersbach, Duke
Samples
Homo sapiens CD8-positive, alpha-beta memory T primary cell primary cell, stimulated with 300 percent Antibody Coated Bead, transfected with a expression vector library
released
intermediate
AnalysisSet
IGVFDS5322ZITQ
CRISPR HiCAR: contact matrix
Charles Gersbach, Duke
Samples
Homo sapiens GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 42 day(s) post change, transfected with a guide library
released
principal
AnalysisSet
IGVFDS3461ZPPS
RNA-seq: fold change over control, transcript quantifications, transcriptome alignments
Charles Gersbach, Duke
Samples
Homo sapiens GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 28 day(s) post change, antagonized with 4 μM GSK3 inhibition for 7 days