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Lab
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External Lab, Community
21
Lior Pachter, Caltech
3
Charles Gersbach, Duke
1
Award
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None
mapping
3
functional characterization
1
Status
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released
25
Status
released
25 Items
100 Items
300 Items
25 items
SoftwareVersion
kb-python v0.28.2
Lior Pachter, Caltech
released
SoftwareVersion
pairtools v0.3.0
External Lab, Community
released
SoftwareVersion
BamTools v2.2.3
External Lab, Community
released
SoftwareVersion
MACS v2.1.0
External Lab, Community
released
SoftwareVersion
Samtools v1.3.0
External Lab, Community
released
SoftwareVersion
Bowtie 2 v2.3.5
External Lab, Community
released
SoftwareVersion
pairsqc v0.2.3
External Lab, Community
released
SoftwareVersion
DESeq2 v1.36.0
External Lab, Community
released
SoftwareVersion
pandas v2.2.2
External Lab, Community
released
SoftwareVersion
FastQC v0.11.9
External Lab, Community
released
SoftwareVersion
anndata v0.10.8
External Lab, Community
released
SoftwareVersion
Bustools v0.43.2
Lior Pachter, Caltech
released
SoftwareVersion
DESeq2 v1.40.0
External Lab, Community
released
SoftwareVersion
Cell Ranger v6.0.1
External Lab, Community
released
SoftwareVersion
Scanpy v1.10.2
External Lab, Community
released
SoftwareVersion
Gersbach HiCAR quantification script v1.0.0
Charles Gersbach, Duke
released
SoftwareVersion
STAR v2.4.1
External Lab, Community
released
SoftwareVersion
NumPy v1.26.4
External Lab, Community
released
SoftwareVersion
Samtools v1.3.1
External Lab, Community
released
SoftwareVersion
Burrows-Wheeler Alignment Tool v0.7.17
External Lab, Community
released
SoftwareVersion
harmonypy v0.0.9
External Lab, Community
released
SoftwareVersion
Cooler v0.8.11
External Lab, Community
released
SoftwareVersion
Bowtie v1.2.3
External Lab, Community
released
SoftwareVersion
Kallisto v0.50.1
Lior Pachter, Caltech
released
SoftwareVersion
Cutadapt v3.4.0
External Lab, Community
released