IGVFFI9917XVXW

{
    "@context": "/terms/",
    "@id": "/reference-files/IGVFFI9917XVXW/",
    "@type": [
        "ReferenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI9917XVXW",
    "aliases": [
        "igvf:ENCFF559QSU"
    ],
    "assay_titles": [],
    "assembly": "GRCh38",
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released reference file [IGVFFI9917XVXW](/reference-files/IGVFFI9917XVXW/) has in progress subobject curated set [IGVFDS7548DHDL](/curated-sets/IGVFDS7548DHDL/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/reference-files/IGVFFI9917XVXW/"
            }
        ],
        "WARNING": [
            {
                "category": "missing dbxrefs",
                "detail": "Reference file [IGVFFI9917XVXW](/reference-files/IGVFFI9917XVXW/) is an external file, but does not have identifier(s) from an external resource listed in `dbxrefs`. Reference files uploaded from external resources are expected to have external identifiers in dbxrefs.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_external_reference_files",
                "path": "/reference-files/IGVFFI9917XVXW/"
            }
        ]
    },
    "award": {
        "@id": "/awards/ENCODE/"
    },
    "collections": [
        "IGVF_catalog_beta_v0.3",
        "IGVF_catalog_beta_v0.2",
        "IGVF_catalog_beta_v0.1",
        "ENCODE"
    ],
    "content_md5sum": "7a1043b6c6324c116be57509add31a10",
    "content_type": "regulatory_regions",
    "controlled_access": false,
    "creation_timestamp": "2023-12-05T21:48:37.252779+00:00",
    "external": true,
    "file_format": "bed",
    "file_format_type": "bed3+",
    "file_set": {
        "@id": "/curated-sets/IGVFDS7548DHDL/",
        "accession": "IGVFDS7548DHDL",
        "file_set_type": "external data for catalog",
        "samples": [
            {
                "@id": "/tissues/IGVFSM3003EMMN/",
                "accession": "IGVFSM3003EMMN",
                "classifications": [
                    "tissue"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/UBERON_0002331/",
                        "term_name": "umbilical cord"
                    }
                ],
                "summary": "virtual umbilical cord tissue, Homo sapiens",
                "taxa": "Homo sapiens"
            }
        ],
        "summary": "Homo sapiens GRCh38 external data for catalog",
        "taxa": "Homo sapiens"
    },
    "file_size": 4032185,
    "gene_list_for": [],
    "href": "/reference-files/IGVFFI9917XVXW/@@download/IGVFFI9917XVXW.bed.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/encode/",
        "title": "ENCODE Project, NHGRI"
    },
    "loci_list_for": [],
    "md5sum": "cb5934951b4e931d3a6c94646a7e5437",
    "notes": "This file was moved from the Cherry lab and award to a community lab and award. This file previously had ENCFF559QSU submitted as external_id, but the property external_id has been now removed.",
    "release_timestamp": "2023-12-07T05:51:54.900881+00:00",
    "s3_uri": "s3://igvf-files/2023/12/05/fdeecb41-8dfc-439c-b225-cfeb683eca8d/IGVFFI9917XVXW.bed.gz",
    "schema_version": "15",
    "source_url": "https://www.encodeproject.org/files/ENCFF559QSU@@download/ENCFF559QSU.bed.gz",
    "status": "released",
    "submitted_by": {
        "@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
        "title": "Meenakshi Kagda"
    },
    "submitted_file_name": "ENCFF559QSU.bed.gz",
    "summary": "GRCh38 regulatory_regions",
    "upload_status": "validated",
    "uuid": "fdeecb41-8dfc-439c-b225-cfeb683eca8d"
}