{
"@context": "/terms/",
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"ReferenceFile",
"File",
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],
"accession": "IGVFFI8884FZOC",
"aliases": [
"charles-gersbach:cd8-tcells-CD2-crispr-screen-grnas-fasta"
],
"assay_titles": [],
"assembly": "custom",
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released reference file [IGVFFI8884FZOC](/reference-files/IGVFFI8884FZOC/) has in progress subobject curated set [IGVFDS1006FHCX](/curated-sets/IGVFDS1006FHCX/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/reference-files/IGVFFI8884FZOC/"
}
]
},
"award": {
"@id": "/awards/HG012053/",
"component": "functional characterization"
},
"content_md5sum": "3d99014485330f031296d35600b258c9",
"content_type": "elements reference",
"controlled_access": false,
"creation_timestamp": "2024-10-15T18:31:54.562017+00:00",
"external": false,
"file_format": "fasta",
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"accession": "IGVFDS1006FHCX",
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{
"@id": "/primary-cells/IGVFSM4694MBIW/",
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"classifications": [
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{
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}
],
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{
"@id": "/sample-terms/CL_0000909/",
"status": "released",
"term_name": "CD8-positive, alpha-beta memory T cell"
}
],
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"summary": "CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 0-10% expression of CD2 ) modified with CRISPRi Sa-dCas9, transduced (lentivirus) with a guide library (MOI of 0.4)",
"taxa": "Homo sapiens"
},
{
"@id": "/primary-cells/IGVFSM6350DJQS/",
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{
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}
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{
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}
],
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},
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{
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}
],
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{
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"term_name": "CD8-positive, alpha-beta memory T cell"
}
],
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{
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{
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}
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{
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}
],
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{
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}
],
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},
{
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{
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}
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{
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"status": "released",
"term_name": "CD8-positive, alpha-beta memory T cell"
}
],
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"taxa": "Homo sapiens"
}
],
"status": "in progress",
"summary": "Homo sapiens GRCh38 custom guide RNAs",
"taxa": "Homo sapiens"
},
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"gene_list_for": [],
"href": "/reference-files/IGVFFI8884FZOC/@@download/IGVFFI8884FZOC.fasta.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
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"title": "Charles Gersbach, Duke"
},
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"md5sum": "07cbdcac7f40c491ee395c92410ff716",
"release_timestamp": "2024-12-16T18:54:58.168261+00:00",
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"title": "Alejandro Barrera"
},
"submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/reference_data/AIM_2_T_cell_project_1/CRISPRi.CD2.grna.fa.gz",
"summary": "custom assembly elements reference",
"upload_status": "validated",
"uuid": "d445a81b-3887-4bc8-abb6-23a8d5e3fd92"
}