IGVFFI7213AWAM

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/reference-files/IGVFFI7213AWAM/",
4    "@type": [
5        "ReferenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI7213AWAM",
10    "aliases": [
11        "charles-gersbach:reference-gencode-v22-transcriptome"
12    ],
13    "assay_titles": [],
14    "assembly": "GRCh38",
15    "audit": {
16        "INTERNAL_ACTION": [
17            {
18                "category": "mismatched status",
19                "detail": "Released reference file [IGVFFI7213AWAM](/reference-files/IGVFFI7213AWAM/) has in progress subobject curated set [IGVFDS2096SBYE](/curated-sets/IGVFDS2096SBYE/).",
20                "level": 30,
21                "level_name": "INTERNAL_ACTION",
22                "name": "audit_item_status",
23                "path": "/reference-files/IGVFFI7213AWAM/"
24            }
25        ]
26    },
27    "award": {
28        "@id": "/awards/HG012053/",
29        "component": "functional characterization"
30    },
31    "checkfiles_version": "v20",
32    "content_md5sum": "880e3373811947c200d3954db4699168",
33    "content_type": "transcriptome reference",
34    "controlled_access": false,
35    "creation_timestamp": "2024-10-25T17:47:12.843160+00:00",
36    "external": false,
37    "file_format": "gtf",
38    "file_set": {
39        "@id": "/curated-sets/IGVFDS2096SBYE/",
40        "@type": [
41            "CuratedSet",
42            "FileSet",
43            "Item"
44        ],
45        "accession": "IGVFDS2096SBYE",
46        "file_set_type": "transcriptome",
47        "status": "in progress",
48        "summary": "Homo sapiens GRCh38 transcriptome",
49        "taxa": "Homo sapiens"
50    },
51    "file_size": 40933020,
52    "gene_list_for": [],
53    "href": "/reference-files/IGVFFI7213AWAM/@@download/IGVFFI7213AWAM.gtf.gz",
54    "input_file_for": [],
55    "integrated_in": [],
56    "lab": {
57        "@id": "/labs/charles-gersbach/",
58        "title": "Charles Gersbach, Duke"
59    },
60    "loci_list_for": [],
61    "md5sum": "43a50f3aa854d8e55700b62ae725a8d4",
62    "quality_metrics": [],
63    "release_timestamp": "2025-04-16T06:15:16.523693+00:00",
64    "s3_uri": "s3://igvf-files/2024/10/25/0cbc2081-eafa-4b59-8ed9-9dac0270de2b/IGVFFI7213AWAM.fasta.gz",
65    "schema_version": "18",
66    "status": "released",
67    "submitted_by": {
68        "@id": "/users/3782ce69-0e9f-4b46-91f9-4578139785c7/",
69        "title": "Ruhi Rai"
70    },
71    "submitted_file_name": "/hpc/group/gersbachlab/Reference_Data/Gencode/v22/gencode.v22.annotation.gtf.gz",
72    "summary": "GRCh38 transcriptome reference",
73    "upload_status": "validated",
74    "uuid": "0cbc2081-eafa-4b59-8ed9-9dac0270de2b"
75}