IGVFFI5380STZG

{
    "@context": "/terms/",
    "@id": "/reference-files/IGVFFI5380STZG/",
    "@type": [
        "ReferenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI5380STZG",
    "aliases": [
        "igvf:ENCFF194QZX"
    ],
    "assay_titles": [],
    "assembly": "GRCh38",
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released reference file [IGVFFI5380STZG](/reference-files/IGVFFI5380STZG/) has in progress subobject curated set [IGVFDS8213TDDM](/curated-sets/IGVFDS8213TDDM/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/reference-files/IGVFFI5380STZG/"
            }
        ],
        "WARNING": [
            {
                "category": "missing dbxrefs",
                "detail": "Reference file [IGVFFI5380STZG](/reference-files/IGVFFI5380STZG/) is an external file, but does not have identifier(s) from an external resource listed in `dbxrefs`. Externally hosted files are expected to have identifiers from external resources in dbxrefs.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_external_reference_files",
                "path": "/reference-files/IGVFFI5380STZG/"
            }
        ]
    },
    "award": {
        "@id": "/awards/ENCODE/"
    },
    "collections": [
        "IGVF_catalog_beta_v0.3",
        "IGVF_catalog_beta_v0.2",
        "IGVF_catalog_beta_v0.1",
        "ENCODE"
    ],
    "content_md5sum": "135267b2f0afe89c75ffbca2d113e31c",
    "content_type": "regulatory_regions",
    "controlled_access": false,
    "creation_timestamp": "2023-12-05T21:44:15.153730+00:00",
    "external": true,
    "file_format": "bed",
    "file_format_type": "bed3+",
    "file_set": {
        "@id": "/curated-sets/IGVFDS8213TDDM/",
        "accession": "IGVFDS8213TDDM",
        "file_set_type": "external data for catalog",
        "samples": [
            {
                "@id": "/tissues/IGVFSM5178EPZS/",
                "accession": "IGVFSM5178EPZS",
                "classifications": [
                    "tissue"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/UBERON_0001157/",
                        "term_name": "transverse colon"
                    }
                ],
                "summary": "virtual transverse colon tissue, Homo sapiens",
                "taxa": "Homo sapiens"
            }
        ],
        "summary": "Homo sapiens GRCh38 external data for catalog",
        "taxa": "Homo sapiens"
    },
    "file_size": 3949422,
    "gene_list_for": [],
    "href": "/reference-files/IGVFFI5380STZG/@@download/IGVFFI5380STZG.bed.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/encode/",
        "title": "ENCODE Project, NHGRI"
    },
    "loci_list_for": [],
    "md5sum": "23544344cb343229b2179ff91fa3c930",
    "notes": "This file was moved from the Cherry lab and award to a community lab and award. This file previously had ENCFF194QZX submitted as external_id, but the property external_id has been now removed.",
    "release_timestamp": "2023-12-07T05:50:48.787299+00:00",
    "s3_uri": "s3://igvf-files/2023/12/05/fedd4311-65c9-4b55-acf4-ab944aa9a63f/IGVFFI5380STZG.bed.gz",
    "schema_version": "15",
    "source_url": "https://www.encodeproject.org/files/ENCFF194QZX@@download/ENCFF194QZX.bed.gz",
    "status": "released",
    "submitted_by": {
        "@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
        "title": "Meenakshi Kagda"
    },
    "submitted_file_name": "ENCFF194QZX.bed.gz",
    "summary": "GRCh38 regulatory_regions",
    "upload_status": "validated",
    "uuid": "fedd4311-65c9-4b55-acf4-ab944aa9a63f"
}