{
"@context": "/terms/",
"@id": "/reference-files/IGVFFI4821BJHQ/",
"@type": [
"ReferenceFile",
"File",
"Item"
],
"accession": "IGVFFI4821BJHQ",
"assay_titles": [],
"audit": {
"ERROR": [
{
"category": "upload status not validated",
"detail": "Reference file [IGVFFI4821BJHQ](/reference-files/IGVFFI4821BJHQ/) has `upload_status` invalidated. Validation error detail: {\"tabular_file_error\": [[34, 14, \"missing-cell\", \"\"], [34, 15, \"missing-cell\", \"\"], [34, 16, \"missing-cell\", \"\"], [34, 17, \"missing-cell\", \"\"], [72, 14, \"missing-cell\", \"\"], [72, 15, \"missing-cell\", \"\"], [72, 16, \"missing-cell\", \"\"], [72, 17, \"missing-cell\", \"\"], [236, 14, \"missing-cell\", \"\"], [236, 15, \"missing-cell\", \"\"]]}. Files are expected to be validated.",
"level": 60,
"level_name": "ERROR",
"name": "audit_upload_status",
"path": "/reference-files/IGVFFI4821BJHQ/"
}
]
},
"award": {
"@id": "/awards/Community/"
},
"collections": [
"IGVF_catalog_beta_v0.1",
"IGVF_catalog_beta_v0.2",
"IGVF_catalog_beta_v0.3"
],
"content_md5sum": "5fc8cb5c9563215dc36e5e166568c459",
"content_type": "variants_drugs",
"controlled_access": false,
"creation_timestamp": "2023-11-22T22:08:19.986923+00:00",
"external": false,
"file_format": "tsv",
"file_set": {
"@id": "/curated-sets/IGVFDS3509VPYM/",
"accession": "IGVFDS3509VPYM",
"file_set_type": "external data for catalog",
"summary": "Homo sapiens external data for catalog",
"taxa": "Homo sapiens"
},
"file_size": 2810001,
"gene_list_for": [],
"href": "/reference-files/IGVFFI4821BJHQ/@@download/IGVFFI4821BJHQ.tsv.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/community/",
"title": "External Lab, Community"
},
"loci_list_for": [],
"md5sum": "4960395ded816a6d651fd3d847f59ffb",
"notes": "This file was moved from the Cherry lab and award to a community lab and award.",
"release_timestamp": "2023-12-07T05:50:02.552944+00:00",
"s3_uri": "s3://igvf-files/2023/11/22/f2810ee7-d39f-45ab-b1a9-a014d941324a/IGVFFI4821BJHQ.tsv.gz",
"schema_version": "14",
"source_url": "https://api.pharmgkb.org/v1/download/file/data/genes.zip",
"status": "released",
"submitted_by": {
"@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
"title": "Meenakshi Kagda"
},
"submitted_file_name": "/home/ubuntu/igvf-catalog-shengcheng/data/data_loading_support_files/pharmGKB_genes.tsv.gz",
"summary": "variants_drugs",
"upload_status": "invalidated",
"uuid": "f2810ee7-d39f-45ab-b1a9-a014d941324a",
"validation_error_detail": "{\"tabular_file_error\": [[34, 14, \"missing-cell\", \"\"], [34, 15, \"missing-cell\", \"\"], [34, 16, \"missing-cell\", \"\"], [34, 17, \"missing-cell\", \"\"], [72, 14, \"missing-cell\", \"\"], [72, 15, \"missing-cell\", \"\"], [72, 16, \"missing-cell\", \"\"], [72, 17, \"missing-cell\", \"\"], [236, 14, \"missing-cell\", \"\"], [236, 15, \"missing-cell\", \"\"]]}"
}