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IGVFFI4777RDZK

released
validated
File Set
IGVFDS5798ODGM(Mus musculus GENCODE M36 genome)
Summary
GENCODE M36 transcriptome reference
File Format
gtf
Content Type
transcriptome reference
md5sum
d7bc72665d30a618e43ff1bfd798b682
Content MD5sum
8363a4927969f31ac0a0a0a2fb8ddb76
File Size
40 MB
Submitted File Name
IGVFFI5842FWGQ_updated_chromosome_names.gtf.gz
Checkfiles Version
v19
Submitter Comment
This file was generated using the script https://github.com/IGVF/atomic-workflows/blob/main/src/notebooks/convert_gtf_chromosome_names.py from IGVFFI5842FWGQ. The notebook contains all the steps necessary to convert the chromosome names in gencode gtf file to ucsc-style chromosome names, as used in genome reference fasta file
Attribution
External Lab, Community

Reference Source Details

Transcriptome Annotation
GENCODE M36

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
gtf
transcriptome reference
External Lab, Community
37 MB
validated

Files Derived From This File

3 items
fasta
transcriptome reference
GRCm39 GENCODE M36 transcriptome reference
External Lab, Community
63 MB
validated
fasta
transcriptome reference
GRCm39 GENCODE M36 transcriptome reference
External Lab, Community
499 MB
validated
tar
transcriptome index
GRCm39 GENCODE M36 transcriptome index
External Lab, Community
1.7 GB
validated