IGVFFI4400PNRD

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/reference-files/IGVFFI4400PNRD/",
4    "@type": [
5        "ReferenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI4400PNRD",
10    "aliases": [
11        "igvf:ENCFF470USV"
12    ],
13    "assay_titles": [],
14    "assembly": "GRCh38",
15    "audit": {
16        "INTERNAL_ACTION": [
17            {
18                "category": "mismatched status",
19                "detail": "Released reference file [IGVFFI4400PNRD](/reference-files/IGVFFI4400PNRD/) has in progress subobject curated set [IGVFDS5497OEBE](/curated-sets/IGVFDS5497OEBE/).",
20                "level": 30,
21                "level_name": "INTERNAL_ACTION",
22                "name": "audit_item_status",
23                "path": "/reference-files/IGVFFI4400PNRD/"
24            }
25        ]
26    },
27    "award": {
28        "@id": "/awards/ENCODE/"
29    },
30    "collections": [
31        "IGVF_catalog_beta_v0.1",
32        "IGVF_catalog_beta_v0.3",
33        "ENCODE",
34        "IGVF_catalog_beta_v0.4",
35        "IGVF_catalog_beta_v0.2"
36    ],
37    "content_md5sum": "33c9ffcc485e985bcbdc02460d887951",
38    "content_type": "genomic_elements",
39    "controlled_access": false,
40    "creation_timestamp": "2023-12-05T21:47:50.195116+00:00",
41    "dbxrefs": [
42        "ENCODE:ENCFF470USV"
43    ],
44    "external": true,
45    "file_format": "bed",
46    "file_format_type": "bed3+",
47    "file_set": {
48        "@id": "/curated-sets/IGVFDS5497OEBE/",
49        "@type": [
50            "CuratedSet",
51            "FileSet",
52            "Item"
53        ],
54        "accession": "IGVFDS5497OEBE",
55        "file_set_type": "external data for catalog",
56        "samples": [
57            {
58                "@id": "/in-vitro-systems/IGVFSM6336BMQK/",
59                "@type": [
60                    "InVitroSystem",
61                    "Biosample",
62                    "Sample",
63                    "Item"
64                ],
65                "accession": "IGVFSM6336BMQK",
66                "classifications": [
67                    "cell line"
68                ],
69                "sample_terms": [
70                    {
71                        "@id": "/sample-terms/EFO_0005704/",
72                        "status": "in progress",
73                        "term_name": "HuH-7.5"
74                    }
75                ],
76                "status": "in progress",
77                "summary": "virtual Homo sapiens HuH-7.5 cell line",
78                "taxa": "Homo sapiens"
79            }
80        ],
81        "status": "in progress",
82        "summary": "Homo sapiens GRCh38 external data for catalog",
83        "taxa": "Homo sapiens"
84    },
85    "file_size": 3293423,
86    "gene_list_for": [],
87    "href": "/reference-files/IGVFFI4400PNRD/@@download/IGVFFI4400PNRD.bed.gz",
88    "input_file_for": [],
89    "integrated_in": [],
90    "lab": {
91        "@id": "/labs/encode/",
92        "title": "ENCODE Project, NHGRI"
93    },
94    "loci_list_for": [],
95    "md5sum": "c4d77ea54b3ddfb154e5d62273f04fc4",
96    "notes": "This file was moved from the Cherry lab and award to a community lab and award. This file previously had ENCFF470USV submitted as external_id, but the property external_id has been now removed. This file's content_type was regulatory_regions, but has been upgraded to genomic_elements.",
97    "quality_metrics": [],
98    "release_timestamp": "2023-12-07T05:51:41.689396+00:00",
99    "s3_uri": "s3://igvf-files/2023/12/05/f45da9fb-993f-41bb-8d32-3585943806e9/IGVFFI4400PNRD.bed.gz",
100    "schema_version": "18",
101    "source_url": "https://www.encodeproject.org/files/ENCFF470USV@@download/ENCFF470USV.bed.gz",
102    "status": "released",
103    "submitted_by": {
104        "@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
105        "title": "Meenakshi Kagda"
106    },
107    "submitted_file_name": "ENCFF470USV.bed.gz",
108    "summary": "GRCh38 genomic_elements",
109    "upload_status": "validated",
110    "uuid": "f45da9fb-993f-41bb-8d32-3585943806e9"
111}