IGVFFI4245JZEQ

released
validation exempted
1{
2    "@context": "/terms/",
3    "@id": "/reference-files/IGVFFI4245JZEQ/",
4    "@type": [
5        "ReferenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI4245JZEQ",
10    "aliases": [
11        "igvf:ENCFF475FKV"
12    ],
13    "assay_titles": [],
14    "assembly": "GRCh38",
15    "audit": {},
16    "award": {
17        "@id": "/awards/ENCODE/"
18    },
19    "catalog_adapters": [
20        "https://github.com/IGVF-DACC/igvf-catalog/blob/dev/data/adapters/encode_mpra_adapter.py"
21    ],
22    "collections": [
23        "IGVF_catalog_beta_v0.3",
24        "IGVF_catalog_beta_v0.2",
25        "ENCODE",
26        "IGVF_catalog_beta_v0.4"
27    ],
28    "content_md5sum": "12f2838c2a00de2133ff239e2da3a369",
29    "content_type": "genomic_elements",
30    "controlled_access": false,
31    "creation_timestamp": "2024-05-15T19:50:24.644861+00:00",
32    "dbxrefs": [
33        "ENCODE:ENCFF475FKV"
34    ],
35    "external": true,
36    "file_format": "bed",
37    "file_format_type": "mpra_starr",
38    "file_set": {
39        "@id": "/curated-sets/IGVFDS8793NHEL/",
40        "@type": [
41            "CuratedSet",
42            "FileSet",
43            "Item"
44        ],
45        "accession": "IGVFDS8793NHEL",
46        "file_set_type": "external data for catalog",
47        "status": "released",
48        "summary": "Homo sapiens GRCh38 external data for catalog",
49        "taxa": "Homo sapiens"
50    },
51    "file_size": 1085644,
52    "gene_list_for": [],
53    "href": "/reference-files/IGVFFI4245JZEQ/@@download/IGVFFI4245JZEQ.bed.gz",
54    "input_file_for": [],
55    "integrated_in": [],
56    "lab": {
57        "@id": "/labs/encode/",
58        "title": "ENCODE Project, NHGRI"
59    },
60    "loci_list_for": [],
61    "md5sum": "b1d8dca4d9c9d95e6cf9b1ffecc5e7fd",
62    "notes": "This file was moved from the Cherry lab and award to a community lab and award. This file previously had ENCFF475FKV submitted as external_id, but the property external_id has been now removed. This file's content_type was regulatory_regions, but has been upgraded to genomic_elements.",
63    "quality_metrics": [],
64    "release_timestamp": "2024-07-12T06:44:16.928803+00:00",
65    "s3_uri": "s3://igvf-files/2024/05/15/2bddf465-0da5-456d-a052-4b874fc44c1e/IGVFFI4245JZEQ.bed.gz",
66    "schema_version": "18",
67    "source_url": "https://www.encodeproject.org/files/ENCFF475FKV/",
68    "status": "released",
69    "submitted_by": {
70        "@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
71        "title": "Meenakshi Kagda"
72    },
73    "submitted_file_name": "ENCFF475FKV.bed.gz",
74    "summary": "GRCh38 genomic_elements",
75    "upload_status": "validation exempted",
76    "uuid": "2bddf465-0da5-456d-a052-4b874fc44c1e",
77    "validation_error_detail": "{\"validate_files\": \"Error [file=/home/ubuntu/igvf-files/2024/05/15/2bddf465-0da5-456d-a052-4b874fc44c1e/IGVFFI4245JZEQ.bed.gz, line=32637]: chrom chr22_KI270879v1_alt not found [chr22_KI270879v1_alt\\t278415\\t278615\\tHepG2_DNasePeakNoPromoter39560\\t462\\t+\\t0.964\\t0.095\\t0.186\\t-1\\t-1]\\nAborting ... found error.\"}"
78}