{
"@context": "/terms/",
"@id": "/reference-files/IGVFFI4245JZEQ/",
"@type": [
"ReferenceFile",
"File",
"Item"
],
"accession": "IGVFFI4245JZEQ",
"aliases": [
"igvf:ENCFF475FKV"
],
"assay_titles": [],
"assembly": "GRCh38",
"audit": {
"WARNING": [
{
"category": "missing dbxrefs",
"detail": "Reference file [IGVFFI4245JZEQ](/reference-files/IGVFFI4245JZEQ/) is an external file, but does not have identifier(s) from an external resource listed in `dbxrefs`. Reference files uploaded from external resources are expected to have external identifiers in dbxrefs.",
"level": 40,
"level_name": "WARNING",
"name": "audit_external_reference_files",
"path": "/reference-files/IGVFFI4245JZEQ/"
},
{
"category": "upload status not validated",
"detail": "Reference file [IGVFFI4245JZEQ](/reference-files/IGVFFI4245JZEQ/) has `upload_status` invalidated. Validation error detail: {\"validate_files\": \"Error [file=/home/ubuntu/igvf-files/2024/05/15/2bddf465-0da5-456d-a052-4b874fc44c1e/IGVFFI4245JZEQ.bed.gz, line=32637]: chrom chr22_KI270879v1_alt not found [chr22_KI270879v1_alt\\t278415\\t278615\\tHepG2_DNasePeakNoPromoter39560\\t462\\t+\\t0.964\\t0.095\\t0.186\\t-1\\t-1]\\nAborting ... found error.\"}. External files are expected to be validated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_upload_status",
"path": "/reference-files/IGVFFI4245JZEQ/"
}
]
},
"award": {
"@id": "/awards/ENCODE/"
},
"collections": [
"IGVF_catalog_beta_v0.3",
"IGVF_catalog_beta_v0.2",
"ENCODE"
],
"content_md5sum": "12f2838c2a00de2133ff239e2da3a369",
"content_type": "regulatory_regions",
"controlled_access": false,
"creation_timestamp": "2024-05-15T19:50:24.644861+00:00",
"external": true,
"file_format": "bed",
"file_format_type": "mpra_starr",
"file_set": {
"@id": "/curated-sets/IGVFDS8793NHEL/",
"accession": "IGVFDS8793NHEL",
"file_set_type": "external data for catalog",
"summary": "Homo sapiens GRCh38 external data for catalog",
"taxa": "Homo sapiens"
},
"file_size": 1085644,
"gene_list_for": [],
"href": "/reference-files/IGVFFI4245JZEQ/@@download/IGVFFI4245JZEQ.bed.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/encode/",
"title": "ENCODE Project, NHGRI"
},
"loci_list_for": [],
"md5sum": "b1d8dca4d9c9d95e6cf9b1ffecc5e7fd",
"notes": "This file was moved from the Cherry lab and award to a community lab and award. This file previously had ENCFF475FKV submitted as external_id, but the property external_id has been now removed.",
"release_timestamp": "2024-07-12T06:44:16.928803+00:00",
"s3_uri": "s3://igvf-files/2024/05/15/2bddf465-0da5-456d-a052-4b874fc44c1e/IGVFFI4245JZEQ.bed.gz",
"schema_version": "15",
"source_url": "https://www.encodeproject.org/files/ENCFF475FKV/",
"status": "released",
"submitted_by": {
"@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
"title": "Meenakshi Kagda"
},
"submitted_file_name": "ENCFF475FKV.bed.gz",
"summary": "GRCh38 regulatory_regions",
"upload_status": "invalidated",
"uuid": "2bddf465-0da5-456d-a052-4b874fc44c1e",
"validation_error_detail": "{\"validate_files\": \"Error [file=/home/ubuntu/igvf-files/2024/05/15/2bddf465-0da5-456d-a052-4b874fc44c1e/IGVFFI4245JZEQ.bed.gz, line=32637]: chrom chr22_KI270879v1_alt not found [chr22_KI270879v1_alt\\t278415\\t278615\\tHepG2_DNasePeakNoPromoter39560\\t462\\t+\\t0.964\\t0.095\\t0.186\\t-1\\t-1]\\nAborting ... found error.\"}"
}