IGVFFI4245JZEQ

{
    "@context": "/terms/",
    "@id": "/reference-files/IGVFFI4245JZEQ/",
    "@type": [
        "ReferenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI4245JZEQ",
    "aliases": [
        "igvf:ENCFF475FKV"
    ],
    "assay_titles": [],
    "assembly": "GRCh38",
    "audit": {
        "WARNING": [
            {
                "category": "missing dbxrefs",
                "detail": "Reference file [IGVFFI4245JZEQ](/reference-files/IGVFFI4245JZEQ/) is an external file, but does not have identifier(s) from an external resource listed in `dbxrefs`. Externally hosted files are expected to have identifiers from external resources in dbxrefs.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_external_reference_files",
                "path": "/reference-files/IGVFFI4245JZEQ/"
            },
            {
                "category": "upload status not validated",
                "detail": "Reference file [IGVFFI4245JZEQ](/reference-files/IGVFFI4245JZEQ/) has `upload_status` invalidated. Validation error detail: {\"validate_files\": \"Error [file=/home/ubuntu/igvf-files/2024/05/15/2bddf465-0da5-456d-a052-4b874fc44c1e/IGVFFI4245JZEQ.bed.gz, line=32637]: chrom chr22_KI270879v1_alt not found [chr22_KI270879v1_alt\\t278415\\t278615\\tHepG2_DNasePeakNoPromoter39560\\t462\\t+\\t0.964\\t0.095\\t0.186\\t-1\\t-1]\\nAborting ... found error.\"}. External files are expected to be validated.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_upload_status",
                "path": "/reference-files/IGVFFI4245JZEQ/"
            }
        ]
    },
    "award": {
        "@id": "/awards/ENCODE/"
    },
    "collections": [
        "IGVF_catalog_beta_v0.3",
        "IGVF_catalog_beta_v0.2",
        "ENCODE"
    ],
    "content_md5sum": "12f2838c2a00de2133ff239e2da3a369",
    "content_type": "regulatory_regions",
    "controlled_access": false,
    "creation_timestamp": "2024-05-15T19:50:24.644861+00:00",
    "external": true,
    "file_format": "bed",
    "file_format_type": "mpra_starr",
    "file_set": {
        "@id": "/curated-sets/IGVFDS8793NHEL/",
        "accession": "IGVFDS8793NHEL",
        "file_set_type": "external data for catalog",
        "summary": "Homo sapiens GRCh38 external data for catalog",
        "taxa": "Homo sapiens"
    },
    "file_size": 1085644,
    "gene_list_for": [],
    "href": "/reference-files/IGVFFI4245JZEQ/@@download/IGVFFI4245JZEQ.bed.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/encode/",
        "title": "ENCODE Project, NHGRI"
    },
    "loci_list_for": [],
    "md5sum": "b1d8dca4d9c9d95e6cf9b1ffecc5e7fd",
    "notes": "This file was moved from the Cherry lab and award to a community lab and award. This file previously had ENCFF475FKV submitted as external_id, but the property external_id has been now removed.",
    "release_timestamp": "2024-07-12T06:44:16.928803+00:00",
    "s3_uri": "s3://igvf-files/2024/05/15/2bddf465-0da5-456d-a052-4b874fc44c1e/IGVFFI4245JZEQ.bed.gz",
    "schema_version": "15",
    "source_url": "https://www.encodeproject.org/files/ENCFF475FKV/",
    "status": "released",
    "submitted_by": {
        "@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
        "title": "Meenakshi Kagda"
    },
    "submitted_file_name": "ENCFF475FKV.bed.gz",
    "summary": "GRCh38 regulatory_regions",
    "upload_status": "invalidated",
    "uuid": "2bddf465-0da5-456d-a052-4b874fc44c1e",
    "validation_error_detail": "{\"validate_files\": \"Error [file=/home/ubuntu/igvf-files/2024/05/15/2bddf465-0da5-456d-a052-4b874fc44c1e/IGVFFI4245JZEQ.bed.gz, line=32637]: chrom chr22_KI270879v1_alt not found [chr22_KI270879v1_alt\\t278415\\t278615\\tHepG2_DNasePeakNoPromoter39560\\t462\\t+\\t0.964\\t0.095\\t0.186\\t-1\\t-1]\\nAborting ... found error.\"}"
}