IGVFFI4188RQJO

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/reference-files/IGVFFI4188RQJO/",
4    "@type": [
5        "ReferenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI4188RQJO",
10    "aliases": [
11        "ansuman-satpathy:refdata-cellranger-arc-GRCh38-2020-mtMask-genome.fa.gz"
12    ],
13    "assay_titles": [],
14    "assembly": "GRCh38",
15    "audit": {},
16    "award": {
17        "@id": "/awards/HG012076/",
18        "component": "mapping"
19    },
20    "checkfiles_version": "v17",
21    "content_md5sum": "8bae3e3a1ef05ead3ab303d4febc8204",
22    "content_type": "genome reference",
23    "controlled_access": false,
24    "creation_timestamp": "2025-03-08T01:02:41.678446+00:00",
25    "description": "Satpathy lab genome reference used in lab-internal workflow",
26    "external": false,
27    "file_format": "fasta",
28    "file_set": {
29        "@id": "/curated-sets/IGVFDS1580ZVOZ/",
30        "@type": [
31            "CuratedSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS1580ZVOZ",
36        "file_set_type": "genome",
37        "status": "released",
38        "summary": "Homo sapiens GRCh38 GRCh38, mm10 GENCODE 32 GENCODE 32, GENCODE M23 GENCODE 44 genome",
39        "taxa": "Homo sapiens"
40    },
41    "file_size": 881649525,
42    "gene_list_for": [],
43    "href": "/reference-files/IGVFFI4188RQJO/@@download/IGVFFI4188RQJO.fasta.gz",
44    "input_file_for": [],
45    "integrated_in": [],
46    "lab": {
47        "@id": "/labs/ansuman-satpathy/",
48        "title": "Ansuman Satpathy, Stanford"
49    },
50    "loci_list_for": [],
51    "md5sum": "53fd4999abd13bd588c4651eb56baaa6",
52    "quality_metrics": [],
53    "release_timestamp": "2025-05-01T20:26:32.048150+00:00",
54    "s3_uri": "s3://igvf-files/2025/03/08/487cf48f-c697-4432-a92c-87dc9dc1b0fc/IGVFFI4188RQJO.fasta.gz",
55    "schema_version": "18",
56    "status": "released",
57    "submitted_by": {
58        "@id": "/users/6667a92a-d202-493a-8c7d-7a56d1380356/",
59        "title": "Khine Lin"
60    },
61    "submitted_file_name": "/Users/khine/Downloads/refdata-cellranger-arc-GRCh38-2020-mtMask-genome.fa.gz",
62    "summary": "GRCh38 GENCODE 32 genome reference",
63    "transcriptome_annotation": "GENCODE 32",
64    "upload_status": "validated",
65    "uuid": "487cf48f-c697-4432-a92c-87dc9dc1b0fc"
66}