IGVFFI3932HEZL

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/reference-files/IGVFFI3932HEZL/",
4    "@type": [
5        "ReferenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3932HEZL",
10    "aliases": [
11        "igvf:cCRE_v3"
12    ],
13    "analysis_step_version": "/analysis-step-versions/3a0aa334-d1d6-43bd-92d0-6f66a0e5eae1/",
14    "assay_titles": [],
15    "assembly": "GRCh38",
16    "audit": {
17        "NOT_COMPLIANT": [
18            {
19                "category": "missing dbxrefs",
20                "detail": "Reference file [IGVFFI3932HEZL](/reference-files/IGVFFI3932HEZL/) is an external file, but does not have identifier(s) from an external resource listed in `dbxrefs`. Reference files uploaded from external resources are expected to have external identifiers in dbxrefs.",
21                "level": 50,
22                "level_name": "NOT_COMPLIANT",
23                "name": "audit_external_reference_files",
24                "path": "/reference-files/IGVFFI3932HEZL/"
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31    "collections": [
32        "ENCODE"
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34    "content_md5sum": "220dfa7f897a080ecb5bf7235c67cf89",
35    "content_type": "elements reference",
36    "controlled_access": false,
37    "creation_timestamp": "2024-04-03T17:31:12.611724+00:00",
38    "external": true,
39    "file_format": "bed",
40    "file_format_type": "bed3+",
41    "file_set": {
42        "@id": "/curated-sets/IGVFDS4146YLZU/",
43        "@type": [
44            "CuratedSet",
45            "FileSet",
46            "Item"
47        ],
48        "accession": "IGVFDS4146YLZU",
49        "file_set_type": "elements",
50        "status": "released",
51        "summary": "Homo sapiens GRCh38 elements",
52        "taxa": "Homo sapiens"
53    },
54    "file_size": 15693854,
55    "gene_list_for": [],
56    "href": "/reference-files/IGVFFI3932HEZL/@@download/IGVFFI3932HEZL.bed.gz",
57    "input_file_for": [
58        "/tabular-files/IGVFFI7272QBOC/",
59        "/tabular-files/IGVFFI9643YRGK/"
60    ],
61    "integrated_in": [],
62    "lab": {
63        "@id": "/labs/community/",
64        "title": "External Lab, Community"
65    },
66    "loci_list_for": [
67        "/prediction-sets/IGVFDS0257SDNV/",
68        "/prediction-sets/IGVFDS2340WJRV/"
69    ],
70    "md5sum": "091819250fdf264319e5ffcdd66eb858",
71    "notes": "This file was moved from the Cherry lab and award to a community lab and award.",
72    "quality_metrics": [],
73    "release_timestamp": "2025-01-08T18:48:12.655275+00:00",
74    "s3_uri": "s3://igvf-files/2024/04/03/3ffba4ba-8fbe-4420-9a64-5df948169537/IGVFFI3932HEZL.bed.gz",
75    "schema_version": "18",
76    "source_url": "https://downloads.wenglab.org/V3/GRCh38-cCREs.bed",
77    "status": "released",
78    "submitted_by": {
79        "@id": "/users/1e75d989-a438-4d77-a451-8a297fd3636e/",
80        "title": "Ian Whaling"
81    },
82    "submitted_file_name": "/Users/ian/Downloads/GRCh38-cCREs.bed.gz",
83    "summary": "GRCh38 elements reference",
84    "upload_status": "validated",
85    "uuid": "3ffba4ba-8fbe-4420-9a64-5df948169537",
86    "workflow": {
87        "@id": "/workflows/IGVFWF3101OPAH/",
88        "name": "BlueSTARR workflow",
89        "uniform_pipeline": false
90    }
91}