IGVFFI3914NGGD

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/reference-files/IGVFFI3914NGGD/",
4    "@type": [
5        "ReferenceFile",
6        "File",
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8    ],
9    "accession": "IGVFFI3914NGGD",
10    "aliases": [
11        "igvf:mm-kallisto-standard-fasta"
12    ],
13    "analysis_step_version": "/analysis-step-versions/bf6f3603-2499-4089-9efc-8b326a90dcb6/",
14    "assay_titles": [],
15    "assembly": "GRCm39",
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Released reference file [IGVFFI3914NGGD](/reference-files/IGVFFI3914NGGD/) has in progress subobject analysis step version [bf6f3603-2499-4089-9efc-8b326a90dcb6](/analysis-step-versions/bf6f3603-2499-4089-9efc-8b326a90dcb6/).",
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23                "name": "audit_item_status",
24                "path": "/reference-files/IGVFFI3914NGGD/"
25            }
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28    "award": {
29        "@id": "/awards/Community/"
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31    "checkfiles_version": "v20",
32    "content_md5sum": "b815057eb1532522ac2737af73e6819c",
33    "content_type": "transcriptome reference",
34    "controlled_access": false,
35    "creation_timestamp": "2025-03-18T16:51:22.357733+00:00",
36    "derived_from": [
37        "/reference-files/IGVFFI9282QLXO/",
38        "/reference-files/IGVFFI4777RDZK/"
39    ],
40    "description": "mouse kb-kallisto transcriptome standard index fasta",
41    "external": false,
42    "file_format": "fasta",
43    "file_set": {
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45        "@type": [
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48            "Item"
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50        "accession": "IGVFDS0995ZJGQ",
51        "file_set_type": "transcriptome",
52        "status": "released",
53        "summary": "Mus musculus GRCm39 GENCODE M36 transcriptome",
54        "taxa": "Mus musculus"
55    },
56    "file_size": 62626086,
57    "gene_list_for": [],
58    "href": "/reference-files/IGVFFI3914NGGD/@@download/IGVFFI3914NGGD.fasta.gz",
59    "input_file_for": [],
60    "integrated_in": [],
61    "lab": {
62        "@id": "/labs/community/",
63        "title": "External Lab, Community"
64    },
65    "loci_list_for": [],
66    "md5sum": "fdc29d90139347a8ad41bf7c7bd77015",
67    "quality_metrics": [],
68    "release_timestamp": "2025-03-31T16:59:01.152654+00:00",
69    "s3_uri": "s3://igvf-files/2025/03/18/1f447846-dbf9-468d-9423-c07b249cf7bb/IGVFFI3914NGGD.fasta.gz",
70    "schema_version": "18",
71    "status": "released",
72    "submitted_by": {
73        "@id": "/users/82c1a7c4-3cb1-4f30-9498-8430881a1c0a/",
74        "title": "Zhewei Shen"
75    },
76    "submitted_file_name": "gs://fc-secure-de19fd29-2253-41cd-9751-1788cf7ad1a5/submissions/intermediates/8aa92473-b587-4778-ba63-64ea6424fbf7/wf_rna/98a93373-ebdf-49e3-aa8f-6769cdfdb33e/call-kb/kb_IGVFFI9282QLXO_IGVFFI5842FWGQ.v2/cdna.fasta",
77    "submitter_comment": "mouse kb transcriptome index file generated by kb-index step. Reuploaded using local downloads at /Users/zheweishen/IGVF/Posting/WRN-812/index_files/mouse/kb_IGVFFI9282QLXO_IGVFFI5842FWGQ.v2/cdna.fasta.gz.",
78    "summary": "GRCm39 GENCODE M36 transcriptome reference",
79    "transcriptome_annotation": "GENCODE M36",
80    "upload_status": "validated",
81    "uuid": "1f447846-dbf9-468d-9423-c07b249cf7bb",
82    "workflow": {
83        "@id": "/workflows/IGVFWF0779GOAZ/",
84        "name": "igvf-kallisto-bustools transcriptome index generation",
85        "uniform_pipeline": false
86    }
87}