IGVFFI2990JTPS

{
    "@context": "/terms/",
    "@id": "/reference-files/IGVFFI2990JTPS/",
    "@type": [
        "ReferenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI2990JTPS",
    "aliases": [
        "igvf:ENCFF167FJQ"
    ],
    "assay_titles": [],
    "assembly": "mm10",
    "audit": {
        "WARNING": [
            {
                "category": "missing dbxrefs",
                "detail": "Reference file [IGVFFI2990JTPS](/reference-files/IGVFFI2990JTPS/) is an external file, but does not have identifier(s) from an external resource listed in `dbxrefs`. Reference files uploaded from external resources are expected to have external identifiers in dbxrefs.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_external_reference_files",
                "path": "/reference-files/IGVFFI2990JTPS/"
            },
            {
                "category": "upload status not validated",
                "detail": "Reference file [IGVFFI2990JTPS](/reference-files/IGVFFI2990JTPS/) has `upload_status` invalidated. Validation error detail: {\"validate_files\": \"mm10 is not a valid assembly. Valid assemblies: ['GRCh38', 'GRCm39']\"}. External files are expected to be validated.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_upload_status",
                "path": "/reference-files/IGVFFI2990JTPS/"
            }
        ]
    },
    "award": {
        "@id": "/awards/ENCODE/"
    },
    "collections": [
        "IGVF_catalog_beta_v0.3",
        "IGVF_catalog_beta_v0.2",
        "ENCODE"
    ],
    "content_md5sum": "5a4a76c003116fbd27591b0cb3338c62",
    "content_type": "regulatory_regions",
    "controlled_access": false,
    "creation_timestamp": "2024-02-24T09:00:10.952521+00:00",
    "external": true,
    "file_format": "bed",
    "file_format_type": "bed9+",
    "file_set": {
        "@id": "/curated-sets/IGVFDS5645BMIY/",
        "accession": "IGVFDS5645BMIY",
        "file_set_type": "external data for catalog",
        "summary": "Mus musculus GRCm39 mm10 external data for catalog",
        "taxa": "Mus musculus"
    },
    "file_size": 13153330,
    "gene_list_for": [],
    "href": "/reference-files/IGVFFI2990JTPS/@@download/IGVFFI2990JTPS.bed.gz",
    "input_file_for": [
        "/reference-files/IGVFFI8753TTYC/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/encode/",
        "title": "ENCODE Project, NHGRI"
    },
    "loci_list_for": [],
    "md5sum": "e054b7a2a0c572d060ccb851b7a294fc",
    "notes": "This file was moved from the Cherry lab and award to a community lab and award. This file previously had ENCFF167FJQ submitted as external_id, but the property external_id has been now removed.",
    "release_timestamp": "2024-04-05T23:04:37.145369+00:00",
    "s3_uri": "s3://igvf-files/2024/02/24/e858567a-47a8-4905-83fd-551ac1a8d960/IGVFFI2990JTPS.bed.gz",
    "schema_version": "15",
    "source_url": "https://www.encodeproject.org/files/ENCFF167FJQ/",
    "status": "released",
    "submitted_by": {
        "@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
        "title": "Meenakshi Kagda"
    },
    "submitted_file_name": "ENCFF167FJQ.bed.gz",
    "summary": "mm10 regulatory_regions",
    "upload_status": "invalidated",
    "uuid": "e858567a-47a8-4905-83fd-551ac1a8d960",
    "validation_error_detail": "{\"validate_files\": \"mm10 is not a valid assembly. Valid assemblies: ['GRCh38', 'GRCm39']\"}"
}