IGVFFI2957SSHD

{
    "@context": "/terms/",
    "@id": "/reference-files/IGVFFI2957SSHD/",
    "@type": [
        "ReferenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI2957SSHD",
    "aliases": [
        "igvf:ENCFF769REH"
    ],
    "assay_titles": [],
    "assembly": "GRCh38",
    "audit": {
        "WARNING": [
            {
                "category": "missing dbxrefs",
                "detail": "Reference file [IGVFFI2957SSHD](/reference-files/IGVFFI2957SSHD/) is an external file, but does not have identifier(s) from an external resource listed in `dbxrefs`. Reference files uploaded from external resources are expected to have external identifiers in dbxrefs.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_external_reference_files",
                "path": "/reference-files/IGVFFI2957SSHD/"
            },
            {
                "category": "upload status not validated",
                "detail": "Reference file [IGVFFI2957SSHD](/reference-files/IGVFFI2957SSHD/) has `upload_status` invalidated. Validation error detail: {\"validate_files\": \"Error [file=/home/ubuntu/igvf-files/2024/05/15/2c872464-d47e-4565-b7d5-fb4145fe7f5b/IGVFFI2957SSHD.bed.gz, line=32637]: chrom chr22_KI270879v1_alt not found [chr22_KI270879v1_alt\\t278415\\t278615\\tHepG2_DNasePeakNoPromoter39560\\t612\\t+\\t2.193\\t0.09\\t0.413\\t-1\\t-1]\\nAborting ... found error.\"}. External files are expected to be validated.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_upload_status",
                "path": "/reference-files/IGVFFI2957SSHD/"
            }
        ]
    },
    "award": {
        "@id": "/awards/ENCODE/"
    },
    "collections": [
        "IGVF_catalog_beta_v0.3",
        "IGVF_catalog_beta_v0.2",
        "ENCODE"
    ],
    "content_md5sum": "0a010890f1575721b3ccf012f5d58446",
    "content_type": "regulatory_regions",
    "controlled_access": false,
    "creation_timestamp": "2024-05-15T19:50:33.190693+00:00",
    "external": true,
    "file_format": "bed",
    "file_format_type": "mpra_starr",
    "file_set": {
        "@id": "/curated-sets/IGVFDS8793NHEL/",
        "accession": "IGVFDS8793NHEL",
        "file_set_type": "external data for catalog",
        "summary": "Homo sapiens GRCh38 external data for catalog",
        "taxa": "Homo sapiens"
    },
    "file_size": 1088965,
    "gene_list_for": [],
    "href": "/reference-files/IGVFFI2957SSHD/@@download/IGVFFI2957SSHD.bed.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/encode/",
        "title": "ENCODE Project, NHGRI"
    },
    "loci_list_for": [],
    "md5sum": "beb62c4e3117b37fd78c90c79a001842",
    "notes": "This file was moved from the Cherry lab and award to a community lab and award. This file previously had ENCFF769REH submitted as external_id, but the property external_id has been now removed.",
    "release_timestamp": "2024-07-12T06:44:16.952235+00:00",
    "s3_uri": "s3://igvf-files/2024/05/15/2c872464-d47e-4565-b7d5-fb4145fe7f5b/IGVFFI2957SSHD.bed.gz",
    "schema_version": "15",
    "source_url": "https://www.encodeproject.org/files/ENCFF769REH/",
    "status": "released",
    "submitted_by": {
        "@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
        "title": "Meenakshi Kagda"
    },
    "submitted_file_name": "ENCFF769REH.bed.gz",
    "summary": "GRCh38 regulatory_regions",
    "upload_status": "invalidated",
    "uuid": "2c872464-d47e-4565-b7d5-fb4145fe7f5b",
    "validation_error_detail": "{\"validate_files\": \"Error [file=/home/ubuntu/igvf-files/2024/05/15/2c872464-d47e-4565-b7d5-fb4145fe7f5b/IGVFFI2957SSHD.bed.gz, line=32637]: chrom chr22_KI270879v1_alt not found [chr22_KI270879v1_alt\\t278415\\t278615\\tHepG2_DNasePeakNoPromoter39560\\t612\\t+\\t2.193\\t0.09\\t0.413\\t-1\\t-1]\\nAborting ... found error.\"}"
}