IGVFFI2331IRGH

{
    "@context": "/terms/",
    "@id": "/reference-files/IGVFFI2331IRGH/",
    "@type": [
        "ReferenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI2331IRGH",
    "aliases": [
        "igvf:ENCFF968BZL"
    ],
    "assay_titles": [],
    "assembly": "GRCh38",
    "audit": {
        "WARNING": [
            {
                "category": "missing dbxrefs",
                "detail": "Reference file [IGVFFI2331IRGH](/reference-files/IGVFFI2331IRGH/) is an external file, but does not have identifier(s) from an external resource listed in `dbxrefs`. Externally hosted files are expected to have identifiers from external resources in dbxrefs.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_external_reference_files",
                "path": "/reference-files/IGVFFI2331IRGH/"
            },
            {
                "category": "upload status not validated",
                "detail": "Reference file [IGVFFI2331IRGH](/reference-files/IGVFFI2331IRGH/) has `upload_status` invalidated. Validation error detail: {\"tabular_file_error\": [[939, 20, \"type-error\", \"type is \\\"number/default\\\"\"], [1516, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [1518, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [1519, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [1528, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [1531, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [1948, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [1949, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [2818, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [3378, 20, \"type-error\", \"type is \\\"number/default\\\"\"]]}. External files are expected to be validated.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_upload_status",
                "path": "/reference-files/IGVFFI2331IRGH/"
            }
        ]
    },
    "award": {
        "@id": "/awards/ENCODE/"
    },
    "collections": [
        "IGVF_catalog_beta_v0.3",
        "ENCODE"
    ],
    "content_md5sum": "bd723f63d23efc5f5d504ad941014a21",
    "content_type": "regulatory_regions_genes",
    "controlled_access": false,
    "creation_timestamp": "2024-07-12T06:47:53.987722+00:00",
    "description": "Combined CRISPR dataset created from harmonizing data from Nasser et al., 2021, Gasperini et al., 2019 and Schraivogel et al., 2020",
    "external": true,
    "file_format": "tsv",
    "file_set": {
        "@id": "/curated-sets/IGVFDS5514HTXN/",
        "accession": "IGVFDS5514HTXN",
        "file_set_type": "external data for catalog",
        "summary": "Homo sapiens GRCh38 external data for catalog",
        "taxa": "Homo sapiens"
    },
    "file_size": 692575,
    "gene_list_for": [],
    "href": "/reference-files/IGVFFI2331IRGH/@@download/IGVFFI2331IRGH.tsv.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/encode/",
        "title": "ENCODE Project, NHGRI"
    },
    "loci_list_for": [],
    "md5sum": "5c0aea41c54ae9d3763a566ddb0e47f8",
    "notes": "This file was moved from the Cherry lab and award to a community lab and award. This file previously had ENCFF968BZL submitted as external_id, but the property external_id has been now removed.",
    "release_timestamp": "2024-07-18T23:37:41.661190+00:00",
    "s3_uri": "s3://igvf-files/2024/07/12/3f89b948-ed80-486d-98ad-702073055b37/IGVFFI2331IRGH.tsv.gz",
    "schema_version": "15",
    "source_url": "https://www.encodeproject.org/files/ENCFF968BZL/@@download/ENCFF968BZL.tsv",
    "status": "released",
    "submitted_by": {
        "@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
        "title": "Meenakshi Kagda"
    },
    "submitted_file_name": "ENCFF968BZL.tsv.gz",
    "summary": "GRCh38 regulatory_regions_genes",
    "upload_status": "invalidated",
    "uuid": "3f89b948-ed80-486d-98ad-702073055b37",
    "validation_error_detail": "{\"tabular_file_error\": [[939, 20, \"type-error\", \"type is \\\"number/default\\\"\"], [1516, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [1518, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [1519, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [1528, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [1531, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [1948, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [1949, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [2818, 21, \"type-error\", \"type is \\\"number/default\\\"\"], [3378, 20, \"type-error\", \"type is \\\"number/default\\\"\"]]}"
}