IGVFFI0203KOIP

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/reference-files/IGVFFI0203KOIP/",
4    "@type": [
5        "ReferenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI0203KOIP",
10    "aliases": [
11        "ansuman-satpathy:refdata-cellranger-atac-GRCh38-and-mm10-2020-A-2.0.0-genes.gtf.gz"
12    ],
13    "assay_titles": [],
14    "assembly": "GRCh38, mm10",
15    "audit": {},
16    "award": {
17        "@id": "/awards/HG012076/",
18        "component": "mapping"
19    },
20    "checkfiles_version": "v17",
21    "content_md5sum": "866ce1465c5da34b47f0a8cb429f3001",
22    "content_type": "transcriptome reference",
23    "controlled_access": false,
24    "creation_timestamp": "2025-03-08T01:06:37.581053+00:00",
25    "description": "Satpathy lab transcriptome reference used in lab-internal workflow",
26    "external": false,
27    "file_format": "gtf",
28    "file_set": {
29        "@id": "/curated-sets/IGVFDS8469LNLU/",
30        "@type": [
31            "CuratedSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS8469LNLU",
36        "file_set_type": "transcriptome",
37        "status": "released",
38        "summary": "Homo sapiens GRCh38 GRCh38, mm10 GENCODE 32 GENCODE 32, GENCODE M23 GENCODE 44 transcriptome",
39        "taxa": "Homo sapiens"
40    },
41    "file_size": 92118957,
42    "gene_list_for": [],
43    "href": "/reference-files/IGVFFI0203KOIP/@@download/IGVFFI0203KOIP.gtf.gz",
44    "input_file_for": [],
45    "integrated_in": [],
46    "lab": {
47        "@id": "/labs/ansuman-satpathy/",
48        "title": "Ansuman Satpathy, Stanford"
49    },
50    "loci_list_for": [],
51    "md5sum": "46e8f9043828188e55bdd9723ece6234",
52    "notes": "This object's transcriptome_annotation was GENCODE 28, GENCODE M17 but has been upgraded to GENCODE 32, GENCODE M23 as requested by the lab.",
53    "quality_metrics": [],
54    "release_timestamp": "2025-05-01T20:26:32.520531+00:00",
55    "s3_uri": "s3://igvf-files/2025/03/08/1db6abe0-c9cd-47c3-a5a1-013e3fd7401c/IGVFFI0203KOIP.gtf.gz",
56    "schema_version": "18",
57    "status": "released",
58    "submitted_by": {
59        "@id": "/users/6667a92a-d202-493a-8c7d-7a56d1380356/",
60        "title": "Khine Lin"
61    },
62    "submitted_file_name": "/Users/khine/Downloads/refdata-cellranger-atac-GRCh38-and-mm10-2020-A-2.0.0-genes.gtf.gz",
63    "summary": "GRCh38, mm10 GENCODE 32, GENCODE M23 transcriptome reference",
64    "transcriptome_annotation": "GENCODE 32, GENCODE M23",
65    "upload_status": "validated",
66    "uuid": "1db6abe0-c9cd-47c3-a5a1-013e3fd7401c"
67}