IGVFFI0085TPUK

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/reference-files/IGVFFI0085TPUK/",
4    "@type": [
5        "ReferenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI0085TPUK",
10    "aliases": [
11        "igvf:ENCFF734CQH"
12    ],
13    "assay_titles": [],
14    "assembly": "GRCh38",
15    "audit": {},
16    "award": {
17        "@id": "/awards/ENCODE/"
18    },
19    "catalog_adapters": [
20        "https://github.com/IGVF-DACC/igvf-catalog/blob/dev/data/adapters/encode_element_gene_adapter.py"
21    ],
22    "collections": [
23        "IGVF_catalog_beta_v0.1",
24        "IGVF_catalog_beta_v0.3",
25        "ENCODE",
26        "IGVF_catalog_beta_v0.4",
27        "IGVF_catalog_beta_v0.2"
28    ],
29    "content_md5sum": "d6ccc776aebf87290b99f3de073a8062",
30    "content_type": "genomic_elements",
31    "controlled_access": false,
32    "creation_timestamp": "2023-11-21T09:34:35.937674+00:00",
33    "dbxrefs": [
34        "ENCODE:ENCFF734CQH"
35    ],
36    "external": true,
37    "file_format": "bed",
38    "file_format_type": "bed3+",
39    "file_set": {
40        "@id": "/curated-sets/IGVFDS9562WBTQ/",
41        "@type": [
42            "CuratedSet",
43            "FileSet",
44            "Item"
45        ],
46        "accession": "IGVFDS9562WBTQ",
47        "file_set_type": "external data for catalog",
48        "status": "released",
49        "summary": "Homo sapiens GRCh38 external data for catalog",
50        "taxa": "Homo sapiens"
51    },
52    "file_size": 3787026,
53    "gene_list_for": [],
54    "href": "/reference-files/IGVFFI0085TPUK/@@download/IGVFFI0085TPUK.bed.gz",
55    "input_file_for": [],
56    "integrated_in": [],
57    "lab": {
58        "@id": "/labs/encode/",
59        "title": "ENCODE Project, NHGRI"
60    },
61    "loci_list_for": [],
62    "md5sum": "1f2169b713389d061f57d5ab8f822de1",
63    "notes": "This file was moved from the Cherry lab and award to a community lab and award. This file previously had ENCFF734CQH submitted as external_id, but the property external_id has been now removed. This file's content_type was regulatory_regions, but has been upgraded to genomic_elements.",
64    "quality_metrics": [],
65    "release_timestamp": "2023-12-07T05:53:09.049157+00:00",
66    "s3_uri": "s3://igvf-files/2023/11/21/7486b012-46ce-446a-8937-aff600267b9b/IGVFFI0085TPUK.bed.gz",
67    "schema_version": "18",
68    "source_url": "https://www.encodeproject.org/files/ENCFF734CQH/@@download/ENCFF734CQH.bed.gz",
69    "status": "released",
70    "submitted_by": {
71        "@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
72        "title": "Meenakshi Kagda"
73    },
74    "submitted_file_name": "ENCFF734CQH.bed.gz",
75    "summary": "GRCh38 genomic_elements",
76    "upload_status": "validated",
77    "uuid": "7486b012-46ce-446a-8937-aff600267b9b"
78}