Whole Organism

Changelog for whole_organism.json

Minor changes since schema version 24

• Extend collections enum list to include IGVF_catalog_beta_v0.5.
• Extend status enum list to include preview.
• Extend collections enum list to include VarChAMP.

Schema version 24

• Remove publication_identifiers.

Schema version 23

• Require sources if product_id is specified.

Minor changes since schema version 22

• Restrict publication_identifiers to submission by admins only.
• Add publications.

Schema version 22

• Remove nih_institutional_certification.

Minor changes since schema version 21

• Allow modifications to link to Crispr Modifications.
• Add protocols.
• Allow modifications to contain a maximum of 2 items.
• Add calculated property upper_bound_age_in_hours.
• Add calculated property lower_bound_age_in_hours.
• Update dbxrefs regex to allow ENCODE sample accessions.
• Add originated_from.

Schema version 21

• Require release_timestamp for any objects with released, archived, or revoked status.

Minor changes since schema version 20

• Update aliases regex to add buenrostro-bernstein as a namespace.
• Add release_timestamp.
• Add MPRAbase to collections.

Schema version 20

• Disallow empty strings in description.

Schema version 19

• Rename sorted_fraction to sorted_from.
• Rename sorted_fraction_detail to sorted_from_detail.

Minor changes since schema version 18

• Add construct_library_sets, moi, nucleic_acid_delivery, time_post_library_delivery, and time_post_library_delivery_units.
• Expand collections enum list to include ClinGen, GREGoR, IGVF_catalog_beta_v0.1, and MaveDB.

Schema version 18

• Mutually require starting_amount and starting_amount_units.

Schema version 17

• Rename source to sources, biosample_term to sample_terms, and modification to modifications.

Schema version 16

• Rename references to publication_identifiers.

Schema version 15

• Disallow part_of and pooled_from.

Schema version 14

• Add virtual.

Schema version 13

• Remove taxa from required and make it calculated.

Schema version 12

• Restrict biosample_term to whole organism.

Minor changes since schema version 11

• Add cellular_sub_pool.

Schema version 11

• Disallow part_of and pooled_from properties.

Schema version 10

• Remove taxa Saccharomyces.

Schema version 9

• Add sorted_fraction_detail.

Minor changes since schema version 7

• Add sorted_fraction.
• Add file_sets.
• Add modification.

Schema version 7

• Rename biomarker to biomarkers.

Schema version 6

• Rename donor to donors.

Minor changes since schema version 5

• Add revoke_detail.
• Rename donors to donor.

Schema version 5

• Remove life_stage.
• Add lower_bound_age.
• Add upper_bound_age.
• Add embryonic.
• Convert age to be calculated from lower_bound_age and upper_bound_age and not submittable.
• Require biosample_term.

Schema version 4

• Rename disease_term to disease_terms.
• Allow disease_terms to be an array of phenotype_terms.

Minor changes since schema version 3

• Add description.

Schema version 3

• Restrict treatments, donors, dbxrefs, aliases, collections, and alternate_accessions to be a non-empty array with at least one item.

Schema version 2

• Add donors and taxa to requirements.