A biosample that is directly harvested from a donor, typically a dissection from an organ.
Required
award, donors, lab, sample_terms, sources
Identifying Properties
accession, aliases, alternate_accessions, uuid
Highlight properties with matching names, “title” attributes, or an enum of those properties. Matching properties might be non-submittable.
string
The units of time associated with age of the biosample.
array[string]
Lab specific identifiers to reference an object.
linkto
Grant associated with the submission.
array[linkto]
Biological markers that are associated with this sample.
string
HubMap Common Coordinate Framework unique identifier corresponding to the organ, biological structure, and spatial location of the tissue specimen.
string
Cellular sub-pool fraction of the sample. Also known as PKR and sub-library.
array[linkto]
The construct library sets of vectors introduced to this sample prior to performing an assay.
string
The date the sample was harvested, dissected or created, depending on the type of the sample.
string
A plain text description of the object.
array[linkto]
Ontology term of the disease associated with the biosample.
array[linkto]
Documents that provide additional information (not data file).
array[linkto]
Donor(s) the sample was derived from.
boolean
Biosample is embryonic.
linkto
Lab associated with the submission.
string
The lot identifier provided by the originating lab or vendor.
number
Lower bound of age of the organism at the time of collection of the sample.
array[linkto]
Links to modifications applied to this biosample.
number
The actual multiplicity of infection (MOI) for vectors introduced to this sample. At least one construct library set must be specified in order to specify MOI. This property should capture the actual MOI, and not the targeted MOI.
string
Method of introduction of nucleic acid into the cell.
linkto
Links to a biosample that was originated from due to differentiation, dedifferentiation, reprogramming, or the introduction of a genetic modification.
linkto
Links to a biosample which represents a larger sample from which this sample was taken regardless of whether it is a tissue taken from an organism or smaller slices of a piece of tissue or aliquots of a cell growth.
integer
The amount of time elapsed since death.
string
The unit in which the PMI time was reported.
array[linkto]
The biosamples this biosample is pooled from.
string
The method by which the tissue was preserved: cryopreservation (slow-freeze) or flash-freezing.
string
The product identifier provided by the originating lab or vendor.
array[string]
Links to the protocol(s) for preparing the samples on Protocols.io.
array[linkto]
The publications associated with this object.
array[linkto]
Ontology terms identifying a biosample.
linkto
Links to a larger sample from which this sample was obtained through sorting.
string
Detail for sample sorted into fractions capturing information about sorting.
array[linkto]
The originating lab(s) or vendor(s).
number
The initial quantity of samples obtained.
string
The units used to quantify the amount of samples obtained.
string
Additional information specified by the submitter to be displayed as a comment on the portal.
number
The time that elapsed past the time-point when the construct library sets were introduced.
string
The units of time that elapsed past the point when the construct library sets were introduced.
array[linkto]
A list of treatments applied to the biosample with the purpose of perturbation.
number
Upper bound of age of the organism at the time of collection of the sample.
string
An external resource with additional information.
boolean
Virtual samples are not representing actual physical entities from experiments, but rather capturing metadata about hypothetical samples that the reported analysis results are relevant for.