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Changelog for tabular_file.json

Minor changes since schema version 13

  • Extend content_type enum list to include reporter experiment barcode.
  • Extend collections enum list to include IGVF_catalog_beta_v0.5.
  • Add checkfiles_version.
  • Extend content_type enum list to include DNA footprint scores.
  • Extend content_type enum list to include cell hashing barcodes.
  • Extend content_type enum list to include unfiltered local differential expression.
  • Extend content_type enum list to include unfiltered global differential expression.
  • Extend upload_status enum list to include validation exempted.
  • Extend status enum list to include preview.
  • Extend content_type enum list to include barcode onlist.
  • Update calculation of summary.
  • Extend transcriptome_annotation enum list to include GENCODE 32.
  • Extend content_type enum list to include differential chromatin contact quantifications.
  • Extend content_type enum list to include variant functional predictions.
  • Extend assembly enum list to include custom.
  • Extend content_type enum list to include bin paired count.

Schema version 13

  • Adjust file_format enum list to remove txt.

Minor changes since schema version 12

  • Extend content_type enum list to include reporter elements.
  • Extend content_type enum list to include reporter experiment.
  • Extend content_type enum list to include reporter variants.
  • Extend content_type enum list to include reporter genomic element effects.
  • Extend content_type enum list to include reporter genomic variant effects.
  • Extend content_type enum list to include differential element quantifications.
  • Add derived_manually.
  • Adjust file_format enum list to restrict usage of txt to admin users.
  • Extend collections enum list to include VarChAMP.
  • Extend content_type enum list to include barcode to TF overexpression mapping.
  • Extend content_type enum list to include coding variant effects.
  • Extend content_type enum list to include peak quantifications.
  • Extend content_type enum list to include variant localization impacts.

Schema version 12

  • Extend content_type enum list to include external source data.
  • Extend content_type enum list to include fragments.
  • Extend content_type enum list to include gene quantifications.
  • Adjust content_type enum list to remove SNP effect matrix.

Minor changes since schema version 11

  • Extend assembly enum list to include Cast - GRCm39.
  • Extend transcriptome_annotation enum list to include GENCODE Cast - M32.
  • Extend content_type enum list to include genes.
  • Extend content_type enum list to include loci.
  • Add calculated property assay_titles.
  • Add calculated property barcode_map_for.
  • Extend content_type enum list to include transcript quantifications.
  • Extend content_type enum list to include barcode to hashtag mapping.
  • Extend content_type enum list to include barcode to variant mapping.
  • Add cell_type_annotation.
  • Extend content_type enum list to include variant binding effects.
  • Extend content_type enum list to include SNP effect matrix.
  • Extend content_type enum list to include tissue positions.
  • Extend content_type enum list to include prime editing guide RNA sequences.
  • Update calculation of summary.
  • Extend content_type enum list to include editing templates.
  • Extend content_type enum list to include variants.
  • Add analysis_step_version.
  • Add calculated property input_file_for.
  • Extend content_type enum list to include sample sort parameters.
  • Extend content_type enum list to include differential gene expression quantifications.
  • Extend content_type enum list to include differential transcript expression quantifications.
  • Extend content_type enum list to include MPRA sequence designs.

Schema version 11

  • Adjust content_type enum list to replace fold over change control with fold change over control.

Schema version 10

  • Reduce upload_status enum list to exclude deposited.
  • Remove anvil_source_url.
  • Add anvil_url.
  • Require controlled_access.

Minor changes since schema version 9

  • Extend file_format_type enum list to include mpra_starr.
  • Extend collections enum list to include Vista.
  • Extend collections enum list to include IGVF_catalog_beta_v0.2.
  • Extend collections enum list to include IGVF_catalog_beta_v0.3.
  • Extend collections enum list to include IGVF_catalog_beta_v0.4.
  • Extend content_type enum list to include barcode to element mapping.

Schema version 9

  • Extend upload_status enum list to include deposited.
  • Add controlled_access.
  • Add anvil_source_url.
  • Add calculated property anvil_destination_url.

Schema version 8

  • Require derived_from to contain at least one value.
  • Require file_format_specifications to contain at least one value.

Minor changes since schema version 7

  • Add calculated property integrated_in.

Schema version 7

  • Require release_timestamp for any objects with released, archived, or revoked status.

Minor changes since schema version 6

  • Update aliases regex to add buenrostro-bernstein as a namespace.

Schema version 6

  • Add GENCODE 44, GENCODE 45, GENCODE M33, and GENCODE M34 to transcriptome_annotation.
  • Remove hg19 and mm10 from assembly.

Minor changes since schema version 5

  • Add fold over change control, guide quantifications, protein to protein interaction score, variant to element mapping, element quantifications, elements reference, and variant effects to content_type.
  • Add sequence barcodes to content_type.
  • Add barcode to sample mapping to content_type.
  • Add release_timestamp.
  • Add MPRAbase to collections.

Schema version 5

  • Require assembly if file_format is one of bam, bed, bedpe, bigWig, bigBed, bigInteract, tabix, or vcf.

Schema version 4

  • Require publicly released files to have upload_status of validated or invalidated.

Schema version 3

  • Disallow empty strings in description.

Schema version 2

  • Require a minimum of 1 item for dbxrefs.