Single Cell ATAC-seq Quality Metric

Schema for submission of a scATAC-seq uniform pipeline quality metric.

Type

Lab specific identifiers to reference an object.

A lab specific identifier to reference an object.

Lab Alias

Aliases

The analysis step version of the quality metric.

Analysis Step Version

File Name

Image Height

Hypertext REFerence

MD5sum

File Size

MIME type

Image Width

Attachment

Award

Creation Timestamp

Description

Duplicate Number

Duplicate Fraction

Mitochondrial Fraction

Joint Barcodes Passing

Low Mapping Quality

Number Of Barcodes

Number Of Barcodes On Onlist

Number Of Candidates

Number Of Corrected Barcodes

Number Of Fragments

Number Of Mapped Reads

Number Of Mappings

Number Of Multi-Mappings

Number Of Output Mappings

Number Of Reads

Number Of Reads With Multi-Mappings

Number Of Uni-Mappings

Number Of Uniquely Mapped Reads

Notes

Percent Duplicates

The file(s) to which this quality metric applies.

Quality Metric Of

Release Timestamp

The version of the JSON schema that the server uses to validate the object.

Schema Version

Status

Submitted By

Additional information specified by the submitter to be displayed as a comment on the portal.

Single Cell ATAC-seq Quality Metric

Changelog for single_cell_atac_seq_quality_metric.json

Changelog for `single_cell_atac_seq_quality_metric.json`