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Signal File

Schema Directory
Title
Signal File
Description
A file containing analyzed sequencing data in signal form using a bigwig format.
Required
award, content_type, file_format, file_set, lab, md5sum, reference_files, strand_specificity
Identifying Properties
accession, aliases, alternate_accessions, md5sum, uuid
Highlight properties with matching names, “title” attributes, or an enum of those properties. Matching properties might be non-submittable.
array[string]
Lab specific identifiers to reference an object.
linkto
The analysis step version of the file.
string
Genome assembly applicable for the annotation data.
linkto
Grant associated with the submission.
linkto
The inferred cell type this file is associated with based on single-cell expression profiling.
string
The type of content in the file.
array[string]
Identifiers from external resources that may have 1-to-1 or 1-to-many relationships with IGVF file objects.
array[linkto]
The files participating as inputs into software to produce this output file.
boolean
A boolean indicating whether the file has been dervided manually without automated computational methods.
string
A plain text description of the object.
array[linkto]
Documents that provide additional information (not data file).
string
The file format or extension of the file.
array[linkto]
Documents that describe the file format and fields of this file.
linkto
The file set that this file belongs to.
integer
File size specified in bytes.
boolean
Indicates if the signal file is filtered.
linkto
Lab associated with the submission.
string
The md5sum of the file being transferred.
boolean
Indicates if the signal file is normalized.
array[linkto]
Link to the reference files used to generate this file.
string
The 0-based coordinate for the default starting position when viewing the signal in a genome browser.
string
The strandedness of the signal file: plus, minus, or unstranded.
string
Original name of the file.
string
Additional information specified by the submitter to be displayed as a comment on the portal.
string
The annotation and version of the reference resource.