Prediction Set

Title
Prediction Set
Description
A file set of computational predictions. Prediction sets contain results of analyses to predict functions or traits of genomic features.
Identifying Properties
accession, aliases, alternate_accessions, uuid
array[string]
Lab specific identifiers to reference an object.
array[linkto]
A list of gene(s) assessed in this prediction set. This property is used to describe the gene(s) being investigated, especially how the input variables in the prediction set affect some critical functionality of the gene(s). For example, the effect could be predicted from genetic variants on the binding affinity of a transcription factor encoded by a gene (assessed_genes). It differs from small_scale_gene_list and large_scale_gene_list, as these are used when the input variables of the prediction set are genes.
Grant associated with the submission.
string
The type of control this file set represents.
array[string]
Identifiers from external resources that may have 1-to-1 or 1-to-many relationships with IGVF file sets.
string
A plain text description of the object.
array[linkto]
Documents that provide additional information (not data file).
array[linkto]
The donor(s) associated with this file set.
string
The category that best describes this prediction set.
array[linkto]
The file set(s) required for this prediction set.
Lab associated with the submission.
The large scale list of (>100 genes) whose functionality is investigated in this prediction set. This property describes the input variables of the prediction set. For example, this list consists of the genes whose expression level is predicted in this prediction set. It differs from assessed_genes (see more information under assessed_genes).
A large scale list (>100) of specific chromosomal regions whose functionality is investigated in this prediction set. This property describes the input variables of the prediction set. For example, this list consists of the genetic variants whose functionality is predicted in this prediction set.
array[linkto]
The publications associated with this object.
array[linkto]
The sample(s) associated with this file set.
string
The scope or scale that this prediction set is designed to target.
array[linkto]
The specific, small scale list of (<=100) gene(s) whose functionality is investigated in this prediction set. This property describes the input variables of the prediction set. For example, this list consists of the genes whose expression level is predicted in this prediction set. It differs from assessed_genes (see more information under assessed_genes).
array[object]
A small scale (<=100) list of specific chromosomal region(s) whose functionality is investigated in this prediction set. This property describes the input variables of the prediction set. For example, this list consists of the genetic variants whose functionality is predicted in this prediction set.
string
Additional information specified by the submitter to be displayed as a comment on the portal.
string
An external resource with additional information.