Perturb-seq Quality Metric

Schema for submission of a Perturb-seq uniform pipeline quality metric.

Type

Lab specific identifiers to reference an object.

A lab specific identifier to reference an object.

Lab Alias

Aliases

Alignment percentage (p_pseudoaligned) reported by Kallisto.

Alignment Percentage

The analysis step version of the quality metric.

Analysis Step Version

File Name

Image Height

Hypertext REFerence

MD5sum

File Size

MIME type

Image Width

Attachment

Average Cells Per Target

Average UMIs Per Cell

Award

Creation Timestamp

Description

Guide Diversity

Mean Mitochondrial Reads

Multiplicity Of Infection

Notes

Paired reads mapped (n_pseudoaligned) reported by Kallisto.

Paired Reads Mapped

Percent Cells Assigned Guide

The file(s) to which this quality metric applies.

Quality Metric Of

Release Timestamp

The version of the JSON schema that the server uses to validate the object.

Schema Version

Status

Submitted By

Additional information specified by the submitter to be displayed as a comment on the portal.

Submitter Comment

Summary

Total Cells Passing Filters

Unfiltered total detected scRNA barcodes (numBarcodes) reported by Kallisto.

Total Detected scRNA Barcodes

Total Guides

Total reads (n_processed) reported by Kallisto.

Total Reads

Total Targets

The unique identifier associated with every object.

Perturb-seq Quality Metric

Changelog for perturb_seq_quality_metric.json

Changelog for `perturb_seq_quality_metric.json`