Home

Perturb-seq Quality Metric

Schema Directory
Title
Perturb-seq Quality Metric
Description
Schema for submission of a Perturb-seq uniform pipeline quality metric.
Version
v1
Required
analysis_step_version, award, lab, quality_metric_of
Identifying Properties
aliases, uuid
Highlight properties with matching names, “title” attributes, or an enum of those properties. Matching properties might be non-submittable.
array[string]
Lab specific identifiers to reference an object.
number
Alignment percentage (p_pseudoaligned) reported by Kallisto.
linkto
The analysis step version of the quality metric.
object
The attached content.
number
Average Cells Per Target
number
Average UMIs Per Cell
linkto
Grant associated with the submission.
string
A plain text description of the object.
number
Guide diversity (Gini index)
linkto
Lab associated with the submission.
number
Mean mitochondrial reads.
number
Multiplicity Of Infection
number
Paired reads mapped (n_pseudoaligned) reported by Kallisto.
number
Percent Cells Assigned Guide
string
Additional information specified by the submitter to be displayed as a comment on the portal.
number
Total Cells Passing Filters
number
Unfiltered total detected scRNA barcodes (numBarcodes) reported by Kallisto.
number
Total Guides
number
Total reads (n_processed) reported by Kallisto.
number
Total Targets