MPRA Quality Metric

Schema for submission of a MPRA uniform pipeline quality metric.

Type

Lab specific identifiers to reference an object.

A lab specific identifier to reference an object.

Lab Alias

Aliases

The analysis step version of the quality metric.

Analysis Step Version

File Name

Image Height

Hypertext REFerence

MD5sum

File Size

MIME type

Image Width

Attachment

Award

Creation Timestamp

Description

Fraction of assigned tested sequences in mapping to determine if the library during the assignment step was sufficiently recovered.

Fraction Of Assigned Oligos

Fraction of tested sequences that passed filtering of the mappable sequences to determine if the designed library was sufficiently recovered. Value is the median of all replicates.

Fraction Of Oligos Passing Filters

Median number of barcodes assigned to tested sequences in mapping as a quality control measure for the assignment step, whether there is sufficient barcode to oligo coverage.

Median Number Of Assigned Barcodes

Median number of barcodes across tested sequences that passed filtering to determine if there was sufficient barcode to oligo coverage. Value is the median of all replicates.

Median Barcodes Passing Filtering

Median of RNA read count for oligos that passed filtering to determine sufficient coverage in terms of read count. Value is the median of all replicates.

Median RNA Read Count

Notes

The file(s) to which this quality metric applies.

Quality Metric Of

Release Timestamp

The version of the JSON schema that the server uses to validate the object.

Schema Version

Status

Submitted By

Additional information specified by the submitter to be displayed as a comment on the portal.

Submitter Comment

Summary

The unique identifier associated with every object.

MPRA Quality Metric

Changelog for `mpra_quality_metric.json`

Schema version 2

MPRA Quality Metric

Changelog for mpra_quality_metric.json

Schema version 2

Changelog for `mpra_quality_metric.json`