MPRA Quality Metric

Title
MPRA Quality Metric
Description
Schema for submission of a MPRA uniform pipeline quality metric.
Version
v1
Required
analysis_step_version, award, lab, quality_metric_of
Identifying Properties
aliases, uuid
array[string]
Lab specific identifiers to reference an object.
The analysis step version of the quality metric.
object
The attached content.
Grant associated with the submission.
string
A plain text description of the object.
number
Fraction of assigned tested sequences in mapping to determine if the library during the mapping step was sufficiently recovered.
Lab associated with the submission.
number
Median number of barcodes assigned to tested sequences in mapping as a quality control measure for the mapping step, whether there is sufficient barcode to oligo coverage.
number
Median number of barcodes across tested sequences that passed filtering to determine if there was sufficient barcode to oligo coverage.
number
Median of RNA read count for oligos that passed filtering to determine sufficient coverage in terms of read count.
number
Percent of tested sequences that passed filtering of the mappable sequences to determine if the designed library was sufficiently recovered.
number
The correlation of log2 RNA/DNA ratios across tested sequences as a measure of replicable activity signal.
string
Additional information specified by the submitter to be displayed as a comment on the portal.