Measurement set is a file set that hosts raw data files (e.g. FASTQs) resulting from sequencing of a library prepared from the nucleic acids of the sample that is the main target of the assay. For example sequencing of accessible regions in the genome, or sequencing of the transcriptome of the sample. The assay can either be bulk or single cell type. The sample specific raw sequencing results will be captured in the measurement sets. The files in the measurement sets are specific to the sample being investigated. See auxiliary sets for files that are not a direct result of sequencing the sample under investigation.
Highlight properties with matching names, “title” attributes, or an enum of those properties. Matching properties might be non-submittable.
array[string]
Lab specific identifiers to reference an object.
linkto
The assay used to produce data in this measurement set.
array[linkto]
The auxiliary sets of files produced alongside raw data from this measurement set.
linkto
Grant associated with the submission.
array[linkto]
File sets that can serve as scientific controls for this file set.
string
The type of control this file set represents.
array[string]
Identifiers from external resources that may have 1-to-1 or 1-to-many relationships with IGVF file sets.
string
A plain text description of the object.
array[linkto]
Documents that provide additional information (not data file).
string
Links to the external site where images produced by this measurement are stored.
string
The category that best describes this measurement set.
array[linkto]
The biological processes measured by this functional assay. For example, a VAMP-seq (MultiSTEP) assay measures the effects of variants on protein carboxylation and secretion processes.
linkto
Lab associated with the submission.
integer
The number of datasets included in the multiome experiment this measurement set is a part of.
string
The custom lab preferred label for the experiment performed in this measurement set.
array[string]
Links to the protocol(s) for conducting the assay on Protocols.io.
array[linkto]
The publications associated with this object.
array[linkto]
The sample(s) associated with this file set.
array[string]
Description of the libraries sequenced in this measurement set.
string
Additional information specified by the submitter to be displayed as a comment on the portal.
array[linkto]
A list of genes targeted in this assay. For example, TF ChIP-seq attempts to identify binding sites of a protein encoded by a specific gene. In CRISPR FlowFISH, the modified samples are sorted based on expression of a specific gene. This property differs from small_scale_gene_list in Construct Library Set, which describes genes targeted by the content integrated in the constructs (such as guide RNAs.)