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Changelog for matrix_file.json

Minor changes since schema version 7

  • Extend collections enum list to include IGVF_catalog_beta_v0.5.
  • Add checkfiles_version.
  • Extend secondary_dimensions enum list to include UMI count.
  • Extend file_format enum list to include pkl.
  • Extend secondary_dimensions enum list to include peak.
  • Extend upload_status enum list to include validation exempted.
  • Extend status enum list to include preview.
  • Update calculation of summary.
  • Extend file_format enum list to include cool.
  • Extend file_format enum list to include mcool.
  • Add derived_manually.
  • Extend collections enum list to include VarChAMP.

Schema version 7

  • Extend secondary_dimensions enum list to include gene expression.
  • Extend secondary_dimensions enum list to include CRISPR guide capture.
  • Extend secondary_dimensions enum list to include antibody capture.
  • Change type of secondary_dimensions to be an array.
  • Rename dimension2 to secondary_dimensions.
  • Rename dimension1 to principal_dimension.

Minor changes since schema version 6

  • Add calculated property assay_titles.
  • Extend content_type enum list to include raw feature barcode matrix.
  • Extend content_type enum list to include filtered feature barcode matrix.
  • Update calculation of summary.
  • Add analysis_step_version.
  • Add calculated property input_file_for.
  • Extend collections enum list to include Vista.
  • Extend collections enum list to include IGVF_catalog_beta_v0.2.
  • Extend collections enum list to include IGVF_catalog_beta_v0.3.
  • Extend collections enum list to include IGVF_catalog_beta_v0.4.

Schema version 6

  • Require derived_from to contain at least one value.
  • Require file_format_specifications to contain at least one value.

Schema version 5

  • Require release_timestamp for any objects with released, archived, or revoked status.

Minor changes since schema version 4

  • Update aliases regex to add buenrostro-bernstein as a namespace.
  • Add hic to file_format.
  • Add genomic position to dimension1 and dimension2.
  • Add release_timestamp.
  • Add MPRAbase to collections.

Schema version 4

  • Require publicly released files to have upload_status of validated or invalidated.

Schema version 3

  • Disallow empty strings in description.

Minor changes since schema version 2

  • Expand file_format enum list to include tar.

Schema version 2

  • Require a minimum of 1 item for dbxrefs.

Minor changes since schema version 1

  • Expand collections enum list to include ClinGen, GREGoR, IGVF_catalog_beta_v0.1, and MaveDB.