In Vitro System

Changelog for in_vitro_system.json

Minor changes since schema version 23

• Extend collections enum list to include IGVF_catalog_beta_v0.5.
• Extend biosample_qualifiers enum list to include calcified.
• Extend status enum list to include preview.
• Extend collections enum list to include VarChAMP.
• Add biosample_qualifiers.

Schema version 23

• Remove publication_identifiers.

Schema version 22

• Require sources if product_id is specified.

Minor changes since schema version 21

• Restrict publication_identifiers to submission by admins only.
• Add publications.

Schema version 21

• Remove nih_institutional_certification.

Minor changes since schema version 20

• Allow modifications to link to Crispr Modifications.
• Add protocols.
• Allow modifications to contain a maximum of 2 items.
• Add calculated property upper_bound_age_in_hours.
• Add calculated property lower_bound_age_in_hours.
• Add growth_medium.
• Add demultiplexed_from.
• Add calculated property demultiplexed_to.
• Update dbxrefs regex to allow ENCODE sample accessions.

Schema version 20

• Require release_timestamp for any objects with released, archived, or revoked status.

Minor changes since schema version 19

• Update aliases regex to add buenrostro-bernstein as a namespace.
• Add MPRAbase to collections.

Schema version 19

• Replace classification with classifications.

Minor changes since schema version 18

• Add release_timestamp.

Schema version 18

• Restrict specification of cell_fate_change_protocol, cell_fate_change_treatments, targeted_sample_term, time_post_change, and time_post_change_units if classification is cell line.

Schema version 17

• Restrict linking of cell_fate_change_treatments to Treatment.
• Add cell_fate_change_protocol.

Schema version 16

• Disallow empty strings in description.

Schema version 15

• Rename sorted_fraction to sorted_from.
• Rename sorted_fraction_detail to sorted_from_detail.

Minor changes since schema version 14

• Add construct_library_sets, moi, nucleic_acid_delivery, time_post_library_delivery, and time_post_library_delivery_units.
• Expand collections enum list to include ClinGen, GREGoR, IGVF_catalog_beta_v0.1, and MaveDB.

Schema version 14

• Mutually require starting_amount and starting_amount_units.

Schema version 13

• Rename source to sources, biosample_term to sample_terms, and modification to modifications.

Minor changes since schema version 12

• Add publication_identifiers.

Schema version 12

• Rename introduced_factors to cell_fate_change_treatments.
• Rename time_post_factors_introduction to time_post_change.
• Rename time_post_factors_introduction_units to time_post_change_units.

Schema version 11

• Add virtual.

Minor changes since schema version 10

• remove permissions from classification.

Schema version 10

• Require targeted_sample_term, introduced_factors, time_post_factors_introduction and time_post_factors_introduction_units if classification is organoid, differentiated cell specimen, or reprogrammed cell specimen.
• Mutually require introduced_factors with time_post_factors_introduction and time_post_factors_introduction_units.

Schema version 9

• Remove taxa from required and make it calculated.

Minor changes since schema version 8

• Add cellular_sub_pool.

Schema version 8

• Rename differentiated cell to differentiated cell specimen.
• Rename reprogrammed cell to reprogrammed cell specimen.
• Add pooled cell specimen.

Schema version 7

• Remove taxa Saccharomyces.

Schema version 6

• Add sorted_fraction_detail.

Minor changes since schema version 5

• Add sorted_fraction.
• Add targeted_sample_term.
• Add modification.

Schema version 5

• Remove differentiated_tissue from classification.

Minor changes since schema version 3

• Add file_sets.

Schema version 3

• Rename biomarker to biomarkers.

Schema version 2

• Rename donor to donors.