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Human Donor

Schema Directory

Changelog for human_donor.json

Minor changes since schema version 14

  • Extend collections enum list to include ACMG73.
  • Extend collections enum list to include Morphic.
  • Extend collections enum list to include StanfordFCC.
  • Extend collections enum list to include IGVF phase 1.
  • Extend collections enum list to include TOPMED Freeze 8.
  • Extend collections enum list to include Williams Syndrome Research.
  • Extend collections enum list to include IGVF_catalog_beta_v0.5.
  • Update dbxrefs regex to add IGSR as a namespace.
  • Extend status enum list to include preview.
  • Extend collections enum list to include VarChAMP.

Schema version 14

  • Remove publication_identifiers.

Minor changes since schema version 13

  • Restrict publication_identifiers to submission by admins only.
  • Add publications.
  • Update calculation of summary.
  • Extend collections enum list to include Vista.
  • Extend collections enum list to include IGVF_catalog_beta_v0.2.
  • Extend collections enum list to include IGVF_catalog_beta_v0.3.
  • Extend collections enum list to include IGVF_catalog_beta_v0.4.

Schema version 13

  • Require release_timestamp for any objects with released, archived, or revoked status.

Minor changes since schema version 12

  • Update aliases regex to add buenrostro-bernstein as a namespace.
  • Add release_timestamp.
  • Add MPRAbase to collections.

Schema version 12

  • Disallow empty strings in description.

Minor changes since schema version 11

  • Expand collections enum list to include ClinGen, GREGoR, IGVF_catalog_beta_v0.1, and MaveDB.

Schema version 11

  • Rename references to publication_identifiers.

Schema version 10

  • Rename human_donor_identifier to human_donor_identifiers.

Schema version 9

  • Add virtual.

Minor changes since schema version 8

  • Add human_donor_identifier.

Schema version 8

  • Add related_donors.
  • Remove parents.

Minor changes since schema version 7

  • Add dbxrefs.

Schema version 7

  • Remove traits.

Schema version 6

  • Remove external_resource.

Minor changes since schema version 4

  • Add African Caribbean, Colombian, Dai Chinese, Kinh Vietnamese, Puerto Rican to ethnicities.

Schema version 4

  • Rename ethnicity to ethnicities.

Schema version 3

  • Remove health_status_history.
  • Add phenotypic_features.

Minor changes since schema version 2

  • Add description.
  • Add Pacific Islander to ethnicity enum.
  • Add revoke_detail.

Schema version 2

  • Restrict parents, external_resources, aliases, collections, alternate_accessions, documents, and references to be a non-empty array with at least one item.

Minor changes since schema version 1

  • Add traits.
  • Rename organism to taxa.
  • Require sex, set default to:
    "unspecified"
  • Rename taxon_id to organism.
  • Restrict taxon_id to NCBI taxonomy ids that start with NCBI:txid followed by numbers.