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Genome Browser Annotation File

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Changelog for genome_browser_annotation_file.json

Minor changes since schema version 9

  • Extend collections enum list to include IGVF_catalog_beta_v0.5.
  • Add checkfiles_version.
  • Extend upload_status enum list to include validation exempted.
  • Extend status enum list to include preview.

Schema version 9

  • Reduce file_format enum list to exclude tabix.

Minor changes since schema version 8

  • Update calculation of summary.
  • Extend transcriptome_annotation enum list to include GENCODE 32.
  • Extend assembly enum list to include custom.
  • Add derived_manually.
  • Extend collections enum list to include VarChAMP.
  • Extend assembly enum list to include Cast - GRCm39.
  • Extend transcriptome_annotation enum list to include GENCODE Cast - M32.
  • Add calculated property assay_titles.
  • Add cell_type_annotation.
  • Update calculation of summary.
  • Add analysis_step_version.
  • Add calculated property input_file_for.
  • Extend file_format_type enum list to include mpra_starr.
  • Extend collections enum list to include Vista.
  • Extend collections enum list to include IGVF_catalog_beta_v0.2.
  • Extend collections enum list to include IGVF_catalog_beta_v0.3.
  • Extend collections enum list to include IGVF_catalog_beta_v0.4.

Schema version 8

  • Require derived_from to contain at least one value.
  • Require file_format_specifications to contain at least one value.

Schema version 7

  • Require release_timestamp for any objects with released, archived, or revoked status.

Minor changes since schema version 6

  • Update aliases regex to add buenrostro-bernstein as a namespace.

Schema version 6

  • Add GENCODE 44, GENCODE 45, GENCODE M33, and GENCODE M34 to transcriptome_annotation.
  • Remove hg19 and mm10 from assembly.

Minor changes since schema version 5

  • Add release_timestamp.
  • Add MPRAbase to collections.

Schema version 5

  • Require assembly if file_format is one of bam, bed, bedpe, bigWig, bigBed, bigInteract, tabix, or vcf.

Schema version 4

  • Require publicly released files to have upload_status of validated or invalidated.

Schema version 3

  • Disallow empty strings in description.

Schema version 2

  • Require a minimum of 1 item for dbxrefs.