Gene

Changelog for gene.json

Minor changes since schema version 8

• Extend status enum list to include preview.
• Extend transcriptome_annotation enum list to include GENCODE 32.
• Extend locations.assembly enum list to include custom.
• Update calculation of summary.

Schema version 8

• Require release_timestamp for any objects with released or archived status.

Minor changes since schema version 7

• Update aliases regex to add buenrostro-bernstein as a namespace.

Schema version 7

• Remove hg19, mm10, and mm9 from assembly on locations.

Minor changes since schema version 6

• Add release_timestamp.
• Add archived to status.

Schema version 6

• Disallow empty strings in description.

Schema version 5

• Rename annotation_version to transcriptome_annotation. Add two new enums GENCODE 40 and GENCODE 41.

Schema version 4

• Change regex pattern of geneid.
• Add version_number.
• Add annotation_version.

Minor changes since schema version 3

• Add GRCm39 to locations.assembly

Schema version 3

• Remove ncbi_entrez_status.
• Change geneID to use ENSEMBL ID instead of NCBI Entrez ID.

Minor changes since schema version 2

• Add description.
• Add aliases to identifyingProperties.

Schema version 2

• Restrict aliases to be a non-empty array with at least one item.

Minor changes since schema version 1

• Add submitter_comment, submitted_by, creation_timestamp and aliases.
• Rename organism to taxa.