Gene

A gene in the human or mouse genomes. The genes objects in IGVF are imported from GENCODE.

Type

Lab specific identifiers to reference an object.

A lab specific identifier to reference an object.

Lab Alias

Aliases

Creation Timestamp

Unique identifiers from external resources.

A unique identifier from external resource (e.g. ENTREZ, HGNC, MGI, FlyBase, WormBase, ENSEMBL, MIM, UniProtKB, Vega, miRBase).

External identifier

External Resources

Description

ENSEMBL GeneID of official nomenclature approved gene. The GeneID does not include the current version number suffix.

ENSEMBL GeneID

The ENSEMBL GeneID concatenated with its version number.

ENSEMBL GeneID With Version

Gene locations specified using 1-based, closed coordinates for different versions of reference genome assemblies.

Gene location specified using 1-based, closed coordinates for a specific version of the reference genome assembly.

The genome assembly to which coordinates relate. e.g. GRCh38.

Mapping Assembly

The number (or letter) designation for the chromosome, e.g. chr1 or chrX

Chromosome

Start

Gene Location

Gene Locations

The full gene name preferably approved by the official nomenclature.

Name

Notes

Release Timestamp

The version of the JSON schema that the server uses to validate the object.

Schema Version

Status

Submitted By

Additional information specified by the submitter to be displayed as a comment on the portal.

Submitter Comment

Summary

Gene symbol approved by the official nomenclature.

Gene Symbol

Alternative symbols that have been used to refer to the gene.

An alternative symbol/name referring to the gene.

Synonym

Synonyms

Taxa

Title

The annotation and version of the reference resource.

Transcriptome Annotation

The unique identifier associated with every object.

UUID

Current ENSEMBL GeneID version number of the gene.