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Assay Term

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Changelog for assay_term.json

Minor changes since schema version 9

  • Extend preferred_assay_titles enum list to include electroporated MPRA.
  • Extend preferred_assay_titles enum list to include varACCESS.

Schema version 9

  • Adjust preferred_assay_titles enum list to replace Variant FlowFISH with Variant-EFFECTS.

Minor changes since schema version 8

  • Extend status enum list to include preview.
  • Extend preferred_assay_titles enum list to include HiCAR.
  • Extend preferred_assay_titles enum list to include ONT dRNA.
  • Extend preferred_assay_titles enum list to include ONT Fiber-seq.
  • Extend preferred_assay_titles enum list to include ONT direct WGS.

Schema version 8

  • Extend preferred_assay_titles enum list to include Variant painting via immunostaining.
  • Extend preferred_assay_titles enum list to include Variant painting via fluorescence.
  • Adjust preferred_assay_titles enum list to remove Variant painting.

Minor changes since schema version 7

  • Extend preferred_assay_titles enum list to include VAMP-seq (MultiSTEP).
  • Extend preferred_assay_titles enum list to include STARR-seq.
  • Extend preferred_assay_titles enum list to include scCRISPR screen.

Schema version 7

  • Adjust preferred_assay_titles enum list to replace CRISPR FlowFISH with CRISPR FlowFISH screen.
  • Extend preferred_assay_titles enum list to include Proliferation CRISPR screen.
  • Extend preferred_assay_titles enum list to include Growth CRISPR screen.
  • Extend preferred_assay_titles enum list to include Migration CRISPR screen.
  • Extend preferred_assay_titles enum list to include CRISPR FACS screen.
  • Extend preferred_assay_titles enum list to include CRISPR mCherry screen.
  • Extend preferred_assay_titles enum list to include HCR-FlowFISH screen.

Minor changes since schema version 6

  • Extend preferred_assay_titles enum list to include Spatial transcriptomics.
  • Update calculation of summary.
  • Extend preferred_assay_titles enum list to include scNT-seq2.

Schema version 6

  • Require preferred_assay_titles to contain at least one value.

Schema version 5

  • Adjust preferred_assay_titles enum list to replace histone ChIP-seq with Histone ChIP-seq.
  • Adjust preferred_assay_titles enum list to replace Parse Split-seq with Parse SPLiT-seq.
  • Adjust preferred_assay_titles enum list to replace Saturation genome editing with SGE.
  • Adjust preferred_assay_titles enum list to replace SHARE-Seq with SHARE-seq.
  • Adjust preferred_assay_titles enum list to replace Yeast two-hybrid with Y2H.

Schema version 4

  • Require release_timestamp for any objects with released or archived status.

Minor changes since schema version 3

  • Update aliases regex to add buenrostro-bernstein as a namespace.
  • Add preferred_assay_titles.
  • Add release_timestamp.
  • Add ATAC-seq, RNA-seq, TF ChIP-seq, histone ChIP-seq, snRNA-seq, scRNA-seq, snATAC-seq and scATAC-seq to preferred_assay_titles.
  • Add archived to status.

Schema version 3

  • Disallow empty strings in description.

Minor changes since schema version 2

  • Add calculated property ontology.
  • Add description.
  • Add is_a.

Schema version 2

  • Restrict aliases to be a non-empty array with at least one item.

Minor changes since schema version 1

  • Add calculated property ancestors.
  • Rename schema assay_ontology_term.json to assay_term.json.
  • Add submitter_comment, submitted_by and creation_timestamp.