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Analysis Set

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Changelog for analysis_set.json

Minor changes since schema version 9

  • Extend collections enum list to include IGVF_catalog_beta_v0.5.
  • Extend status enum list to include preview.
  • Rename calculated property input_file_set_for to input_for.

Schema version 9

  • Convert samples to be calculated from input_file_sets and demultiplexed_sample.
  • Add demultiplexed_sample.

Minor changes since schema version 8

  • Add calculated property workflows.
  • Extend collections enum list to include VarChAMP.
  • Add calculated property sample_summary.
  • Add calculated property functional_assay_mechanisms.
  • Add calculated property protocols.
  • Add control_type.
  • Add external_image_data_url.

Schema version 8

  • Remove publication_identifiers.

Minor changes since schema version 7

  • Restrict publication_identifiers to submission by admins only.
  • Add publications.

Schema version 7

  • Adjust file_set_type enum list to replace primary analysis with principal analysis.

Minor changes since schema version 6

  • Extend collections enum list to include Vista.
  • Extend collections enum list to include IGVF_catalog_beta_v0.2.
  • Extend collections enum list to include IGVF_catalog_beta_v0.3.
  • Extend collections enum list to include IGVF_catalog_beta_v0.4.
  • Add calculated property input_file_set_for.

Schema version 6

  • Require release_timestamp for any objects with released, archived, or revoked status.

Minor changes since schema version 5

  • Update aliases regex to add buenrostro-bernstein as a namespace.
  • Add release_timestamp.
  • Add MPRAbase to collections.
  • Add calculated submitted_files_timestamp.

Schema version 5

  • Disallow empty strings in description.

Schema version 4

  • Add file_set_type.
  • Require file_set_type.

Minor changes since schema version 3

  • Add files.
  • Add dbxrefs.
  • Add control_for.
  • Add publication_identifiers.
  • Convert donors to be calculated from samples.
  • Expand collections enum list to include ClinGen, GREGoR, IGVF_catalog_beta_v0.1, and MaveDB.
  • Rename assay_title to assay_titles.

Schema version 3

  • Change accessionType to DS

Schema version 2

  • Rename sample to samples.
  • Rename donor to donors.
  • Rename input_file_set to input_file_sets.