colon — IGVFSM7017UXAA

released
1{
2    "@context": "/terms/",
3    "@id": "/primary-cells/IGVFSM7017UXAA/",
4    "@type": [
5        "PrimaryCell",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM7017UXAA",
11    "age": "unknown",
12    "aliases": [
13        "buenrostro-bernstein:surya-DSS16-DSS-m1 1_to_32, DSS16-DSS-m2 33_to_64, DSS16-Control-m3 65_to_96"
14    ],
15    "audit": {
16        "INTERNAL_ACTION": [
17            {
18                "category": "missing publication",
19                "detail": "Primary cell [IGVFSM7017UXAA](/primary-cells/IGVFSM7017UXAA/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
20                "level": 30,
21                "level_name": "INTERNAL_ACTION",
22                "name": "audit_sample_missing_publication",
23                "path": "/primary-cells/IGVFSM7017UXAA/"
24            }
25        ],
26        "WARNING": [
27            {
28                "category": "missing age",
29                "detail": "Primary cell [IGVFSM7017UXAA](/primary-cells/IGVFSM7017UXAA/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
30                "level": 40,
31                "level_name": "WARNING",
32                "name": "audit_biosample_age",
33                "path": "/primary-cells/IGVFSM7017UXAA/"
34            }
35        ]
36    },
37    "award": {
38        "@id": "/awards/HG011986/",
39        "component": "mapping"
40    },
41    "classifications": [
42        "primary cell"
43    ],
44    "creation_timestamp": "2025-02-07T01:56:02.333621+00:00",
45    "donors": [
46        {
47            "@id": "/rodent-donors/IGVFDO2984VHVD/",
48            "accession": "IGVFDO2984VHVD",
49            "status": "released",
50            "strain": "C57BL/6J"
51        },
52        {
53            "@id": "/rodent-donors/IGVFDO6000ECIY/",
54            "accession": "IGVFDO6000ECIY",
55            "status": "released",
56            "strain": "C57BL/6J"
57        },
58        {
59            "@id": "/rodent-donors/IGVFDO5001DPQO/",
60            "accession": "IGVFDO5001DPQO",
61            "status": "released",
62            "strain": "C57BL/6J"
63        }
64    ],
65    "file_sets": [
66        {
67            "@id": "/measurement-sets/IGVFDS3212RENM/",
68            "accession": "IGVFDS3212RENM",
69            "aliases": [
70                "buenrostro-bernstein:surya-mouse-colon_mm-set10"
71            ],
72            "file_set_type": "experimental data",
73            "lab": {
74                "title": "Jason Buenrostro, Broad"
75            },
76            "preferred_assay_title": "SHARE-seq",
77            "status": "released",
78            "summary": "single-cell ATAC-seq (SHARE-seq)"
79        },
80        {
81            "@id": "/measurement-sets/IGVFDS4205JWPE/",
82            "accession": "IGVFDS4205JWPE",
83            "aliases": [
84                "buenrostro-bernstein:surya-mouse-colon_mm-set21"
85            ],
86            "file_set_type": "experimental data",
87            "lab": {
88                "title": "Jason Buenrostro, Broad"
89            },
90            "preferred_assay_title": "SHARE-seq",
91            "status": "released",
92            "summary": "single-cell RNA sequencing assay (SHARE-seq)"
93        },
94        {
95            "@id": "/measurement-sets/IGVFDS1130NULC/",
96            "accession": "IGVFDS1130NULC",
97            "aliases": [
98                "buenrostro-bernstein:surya-mouse-colon_mm-set22"
99            ],
100            "file_set_type": "experimental data",
101            "lab": {
102                "title": "Jason Buenrostro, Broad"
103            },
104            "preferred_assay_title": "SHARE-seq",
105            "status": "released",
106            "summary": "single-cell RNA sequencing assay (SHARE-seq)"
107        },
108        {
109            "@id": "/measurement-sets/IGVFDS1680VACI/",
110            "accession": "IGVFDS1680VACI",
111            "aliases": [
112                "buenrostro-bernstein:surya-mouse-colon_mm-set9"
113            ],
114            "file_set_type": "experimental data",
115            "lab": {
116                "title": "Jason Buenrostro, Broad"
117            },
118            "preferred_assay_title": "SHARE-seq",
119            "status": "released",
120            "summary": "single-cell ATAC-seq (SHARE-seq)"
121        },
122        {
123            "@id": "/analysis-sets/IGVFDS0237MRDL/",
124            "accession": "IGVFDS0237MRDL",
125            "aliases": [
126                "buenrostro-bernstein:surya-mouse-colitis-primary-cell-analysis-set"
127            ],
128            "file_set_type": "intermediate analysis",
129            "lab": {
130                "title": "Jason Buenrostro, Broad"
131            },
132            "status": "released",
133            "summary": "SHARE-seq: fragments, sparse gene count matrix"
134        }
135    ],
136    "institutional_certificates": [],
137    "lab": {
138        "@id": "/labs/jason-buenrostro/",
139        "title": "Jason Buenrostro, Broad"
140    },
141    "multiplexed_in": [],
142    "origin_of": [],
143    "parts": [],
144    "pooled_in": [],
145    "release_timestamp": "2025-03-26T17:34:32.269007+00:00",
146    "sample_terms": [
147        {
148            "@id": "/sample-terms/UBERON_0001155/",
149            "status": "released",
150            "term_name": "colon"
151        }
152    ],
153    "schema_version": "22",
154    "sex": "unspecified",
155    "sorted_fractions": [],
156    "sources": [
157        {
158            "@id": "/sources/jackson-labs/",
159            "status": "released",
160            "title": "The Jackson Laboratory"
161        }
162    ],
163    "status": "released",
164    "submitted_by": {
165        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
166        "title": "Siddarth Wekhande"
167    },
168    "summary": "Mus musculus C57BL/6J colon cell",
169    "taxa": "Mus musculus",
170    "uuid": "7a7500c1-29b3-4cf6-8e50-ea3601bffe92",
171    "virtual": false
172}