peripheral blood mononuclear cell — IGVFSM6457LZED

preview
1{
2    "@context": "/terms/",
3    "@id": "/primary-cells/IGVFSM6457LZED/",
4    "@type": [
5        "PrimaryCell",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM6457LZED",
11    "age": "32.0",
12    "age_units": "year",
13    "aliases": [
14        "jimmie-ye:donor_220_XX3-SC2"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "classifications": [
22        "primary cell"
23    ],
24    "creation_timestamp": "2025-03-07T23:14:31.480424+00:00",
25    "description": "PBMCs isolated from primary blood",
26    "donors": [
27        {
28            "@id": "/human-donors/IGVFDO8191IFPE/",
29            "accession": "IGVFDO8191IFPE",
30            "ethnicities": [
31                "Indigenous in North America"
32            ],
33            "status": "preview"
34        }
35    ],
36    "file_sets": [
37        {
38            "@id": "/measurement-sets/IGVFDS1879IAKX/",
39            "accession": "IGVFDS1879IAKX",
40            "aliases": [
41                "jimmie-ye:XX3-SC2_snATAC"
42            ],
43            "file_set_type": "experimental data",
44            "lab": {
45                "title": "Jimmie Ye, UCSF"
46            },
47            "preferred_assay_title": "10x multiome",
48            "status": "preview",
49            "summary": "single-nucleus ATAC-seq (10x multiome)"
50        },
51        {
52            "@id": "/measurement-sets/IGVFDS0217CJQJ/",
53            "accession": "IGVFDS0217CJQJ",
54            "aliases": [
55                "jimmie-ye:XX3-SC2_snRNA"
56            ],
57            "file_set_type": "experimental data",
58            "lab": {
59                "title": "Jimmie Ye, UCSF"
60            },
61            "preferred_assay_title": "10x multiome",
62            "status": "preview",
63            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
64        },
65        {
66            "@id": "/analysis-sets/IGVFDS8406XPOO/",
67            "accession": "IGVFDS8406XPOO",
68            "aliases": [
69                "jimmie-ye:XX3-SC2-analysis-set"
70            ],
71            "file_set_type": "intermediate analysis",
72            "lab": {
73                "title": "Jimmie Ye, UCSF"
74            },
75            "status": "in progress",
76            "summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome): fragments, index"
77        }
78    ],
79    "institutional_certificates": [
80        {
81            "@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
82            "certificate_identifier": "IP115-26",
83            "controlled_access": true,
84            "data_use_limitation": "GRU",
85            "data_use_limitation_summary": "GRU",
86            "status": "in progress"
87        }
88    ],
89    "lab": {
90        "@id": "/labs/jimmie-ye/",
91        "title": "Jimmie Ye, UCSF"
92    },
93    "lower_bound_age": 32,
94    "lower_bound_age_in_hours": 280320,
95    "multiplexed_in": [
96        {
97            "@id": "/multiplexed-samples/IGVFSM4434DRKC/",
98            "accession": "IGVFSM4434DRKC",
99            "status": "preview"
100        }
101    ],
102    "origin_of": [],
103    "parts": [],
104    "pooled_in": [],
105    "sample_terms": [
106        {
107            "@id": "/sample-terms/CL_2000001/",
108            "status": "released",
109            "term_name": "peripheral blood mononuclear cell"
110        }
111    ],
112    "schema_version": "22",
113    "sex": "male",
114    "sorted_fractions": [],
115    "sources": [
116        {
117            "@id": "/labs/jimmie-ye/",
118            "status": "current",
119            "title": "Jimmie Ye, UCSF"
120        }
121    ],
122    "status": "preview",
123    "submitted_by": {
124        "@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
125        "title": "Marcus Alvarez"
126    },
127    "summary": "Homo sapiens (male, 32.0 years) peripheral blood mononuclear cell",
128    "taxa": "Homo sapiens",
129    "upper_bound_age": 32,
130    "upper_bound_age_in_hours": 280320,
131    "uuid": "7f9fdd7b-ccc6-4f05-b604-9a9efe618071",
132    "virtual": false
133}