{
"@context": "/terms/",
"@id": "/primary-cells/IGVFSM5209OUZF/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5209OUZF",
"age": "unknown",
"aliases": [
"maya-kasowski:sample_4238"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Primary cell [IGVFSM5209OUZF](/primary-cells/IGVFSM5209OUZF/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/primary-cells/IGVFSM5209OUZF/"
}
],
"WARNING": [
{
"category": "missing age",
"detail": "Primary cell [IGVFSM5209OUZF](/primary-cells/IGVFSM5209OUZF/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/primary-cells/IGVFSM5209OUZF/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"primary cell"
],
"creation_timestamp": "2025-03-06T02:02:31.529444+00:00",
"description": "Bone marrow specimen",
"donors": [
{
"@id": "/human-donors/IGVFDO0898EWTR/",
"accession": "IGVFDO0898EWTR",
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS7799SGAK/",
"accession": "IGVFDS7799SGAK",
"aliases": [
"maya-kasowski:sample_4238_WGS"
],
"file_set_type": "experimental data",
"lab": {
"title": "Maya Kasowski, Stanford"
},
"preferred_assay_title": "WGS",
"status": "released",
"summary": "WGS"
},
{
"@id": "/measurement-sets/IGVFDS7221AXOO/",
"accession": "IGVFDS7221AXOO",
"aliases": [
"maya-kasowski:10X_multiome_snRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Maya Kasowski, Stanford"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6299DIZF/",
"accession": "IGVFDS6299DIZF",
"aliases": [
"maya-kasowski:10X_multiome_snATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Maya Kasowski, Stanford"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1790XLZR/",
"accession": "IGVFDS1790XLZR",
"aliases": [
"maya-kasowski:Scale_scATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Maya Kasowski, Stanford"
},
"preferred_assay_title": "scATAC-seq",
"status": "preview",
"summary": "scATAC-seq"
},
{
"@id": "/measurement-sets/IGVFDS9255GFCR/",
"accession": "IGVFDS9255GFCR",
"aliases": [
"maya-kasowski:Parse_P1_scRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Maya Kasowski, Stanford"
},
"preferred_assay_title": "Parse SPLiT-seq",
"status": "preview",
"summary": "Parse SPLiT-seq"
},
{
"@id": "/measurement-sets/IGVFDS2205WNED/",
"accession": "IGVFDS2205WNED",
"aliases": [
"maya-kasowski:Scale_scRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Maya Kasowski, Stanford"
},
"preferred_assay_title": "scRNA-seq",
"status": "preview",
"summary": "scRNA-seq"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/5d9a7abd-9957-4b1a-91cd-72ce9610785c/",
"certificate_identifier": "IP115-20",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
}
],
"lab": {
"@id": "/labs/maya-kasowski/",
"title": "Maya Kasowski, Stanford"
},
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM6460HYJE/",
"accession": "IGVFSM6460HYJE",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1625LLXE/",
"accession": "IGVFSM1625LLXE",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3160GZYX/",
"accession": "IGVFSM3160GZYX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4500AYVD/",
"accession": "IGVFSM4500AYVD",
"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-03-26T19:36:52.626986+00:00",
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"status": "released",
"term_name": "bone marrow"
}
],
"schema_version": "22",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/maya-kasowski/",
"status": "current",
"title": "Maya Kasowski, Stanford"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/2bebcf9d-414f-4058-8d97-00020741a419/",
"title": "Shouvik Mani"
},
"summary": "Homo sapiens (male) bone marrow cell",
"taxa": "Homo sapiens",
"uuid": "d9da56ce-31e5-457c-a1eb-de153d4c3917",
"virtual": false
}