peripheral blood mononuclear cell — IGVFSM3516FRID

preview
1{
2    "@context": "/terms/",
3    "@id": "/primary-cells/IGVFSM3516FRID/",
4    "@type": [
5        "PrimaryCell",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM3516FRID",
11    "age": "26.0",
12    "age_units": "year",
13    "aliases": [
14        "jimmie-ye:donor_342_XX21-SC4"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "classifications": [
22        "primary cell"
23    ],
24    "creation_timestamp": "2025-03-07T23:14:20.860095+00:00",
25    "description": "PBMCs isolated from primary blood",
26    "donors": [
27        {
28            "@id": "/human-donors/IGVFDO8133DBEU/",
29            "accession": "IGVFDO8133DBEU",
30            "ethnicities": [
31                "Indigenous in North America"
32            ],
33            "status": "preview"
34        }
35    ],
36    "file_sets": [
37        {
38            "@id": "/measurement-sets/IGVFDS3245PEOK/",
39            "accession": "IGVFDS3245PEOK",
40            "aliases": [
41                "jimmie-ye:XX21-SC4_snATAC"
42            ],
43            "file_set_type": "experimental data",
44            "lab": {
45                "title": "Jimmie Ye, UCSF"
46            },
47            "preferred_assay_title": "10x multiome",
48            "status": "preview",
49            "summary": "single-nucleus ATAC-seq (10x multiome)"
50        },
51        {
52            "@id": "/measurement-sets/IGVFDS7129ASVR/",
53            "accession": "IGVFDS7129ASVR",
54            "aliases": [
55                "jimmie-ye:XX21-SC4_snRNA"
56            ],
57            "file_set_type": "experimental data",
58            "lab": {
59                "title": "Jimmie Ye, UCSF"
60            },
61            "preferred_assay_title": "10x multiome",
62            "status": "preview",
63            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
64        },
65        {
66            "@id": "/analysis-sets/IGVFDS6116UVVK/",
67            "accession": "IGVFDS6116UVVK",
68            "aliases": [
69                "jimmie-ye:XX21-SC4-analysis-set"
70            ],
71            "file_set_type": "intermediate analysis",
72            "lab": {
73                "title": "Jimmie Ye, UCSF"
74            },
75            "status": "in progress",
76            "summary": "10x multiome: fragments, index"
77        }
78    ],
79    "institutional_certificates": [
80        {
81            "@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
82            "certificate_identifier": "IP115-26",
83            "controlled_access": true,
84            "data_use_limitation": "GRU",
85            "status": "in progress"
86        }
87    ],
88    "lab": {
89        "@id": "/labs/jimmie-ye/",
90        "title": "Jimmie Ye, UCSF"
91    },
92    "lower_bound_age": 26,
93    "lower_bound_age_in_hours": 227760,
94    "multiplexed_in": [
95        {
96            "@id": "/multiplexed-samples/IGVFSM9160FXRO/",
97            "accession": "IGVFSM9160FXRO",
98            "status": "preview"
99        }
100    ],
101    "origin_of": [],
102    "parts": [],
103    "pooled_in": [],
104    "sample_terms": [
105        {
106            "@id": "/sample-terms/CL_2000001/",
107            "status": "released",
108            "term_name": "peripheral blood mononuclear cell"
109        }
110    ],
111    "schema_version": "22",
112    "sex": "female",
113    "sorted_fractions": [],
114    "sources": [
115        {
116            "@id": "/labs/jimmie-ye/",
117            "status": "current",
118            "title": "Jimmie Ye, UCSF"
119        }
120    ],
121    "status": "preview",
122    "submitted_by": {
123        "@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
124        "title": "Marcus Alvarez"
125    },
126    "summary": "Homo sapiens (female, 26.0 years) peripheral blood mononuclear cell",
127    "taxa": "Homo sapiens",
128    "upper_bound_age": 26,
129    "upper_bound_age_in_hours": 227760,
130    "uuid": "fce5092e-976b-4233-8ae1-40e5ac415aa0",
131    "virtual": false
132}