{
"@context": "/terms/",
"@id": "/primary-cells/IGVFSM1242TZJM/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1242TZJM",
"age": "unknown",
"aliases": [
"buenrostro-bernstein:surya-DSS17-DSS-m1 1_to_16, DSS17-DSS-m2 17_to_32, DSS17-Control-m3 33_to_48, DSS18-DSS-m1 49_to_64, DSS18-DSS-m2 65_to_80, DSS18-Control-m3 81_to_96"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Primary cell [IGVFSM1242TZJM](/primary-cells/IGVFSM1242TZJM/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/primary-cells/IGVFSM1242TZJM/"
}
],
"WARNING": [
{
"category": "missing age",
"detail": "Primary cell [IGVFSM1242TZJM](/primary-cells/IGVFSM1242TZJM/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/primary-cells/IGVFSM1242TZJM/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping"
},
"classifications": [
"primary cell"
],
"creation_timestamp": "2025-02-07T01:56:04.405316+00:00",
"donors": [
{
"@id": "/rodent-donors/IGVFDO3717FOSD/",
"accession": "IGVFDO3717FOSD",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO9324UYNE/",
"accession": "IGVFDO9324UYNE",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO9911FTUN/",
"accession": "IGVFDO9911FTUN",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO4820BFGB/",
"accession": "IGVFDO4820BFGB",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO7063RDKN/",
"accession": "IGVFDO7063RDKN",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO1782CWBW/",
"accession": "IGVFDO1782CWBW",
"status": "released",
"strain": "C57BL/6J"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS4279AZHG/",
"accession": "IGVFDS4279AZHG",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set24"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell RNA sequencing assay (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS7425QRXB/",
"accession": "IGVFDS7425QRXB",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set11"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell ATAC-seq (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS9896MQFE/",
"accession": "IGVFDS9896MQFE",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set12"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell ATAC-seq (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS8974KOJW/",
"accession": "IGVFDS8974KOJW",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set23"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell RNA sequencing assay (SHARE-seq)"
},
{
"@id": "/analysis-sets/IGVFDS0237MRDL/",
"accession": "IGVFDS0237MRDL",
"aliases": [
"buenrostro-bernstein:surya-mouse-colitis-primary-cell-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"status": "released",
"summary": "SHARE-seq: fragments, sparse gene count matrix"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/jason-buenrostro/",
"title": "Jason Buenrostro, Broad"
},
"multiplexed_in": [],
"origin_of": [],
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-03-26T17:34:02.015275+00:00",
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001155/",
"status": "released",
"term_name": "colon"
}
],
"schema_version": "22",
"sex": "unspecified",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/jackson-labs/",
"status": "released",
"title": "The Jackson Laboratory"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"summary": "Mus musculus C57BL/6J colon cell",
"taxa": "Mus musculus",
"uuid": "7c681407-92e0-4ba2-bae4-f91decdea1df",
"virtual": false
}